Detailed information NTG0790482

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP81_RS24065
• Genome accession: NZ_CP118142
• Coordinates: 5336916..5339147 (-)
• Length: 743 a.a.
• NCBI ID: WP_124323848.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17809
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5331916..5344147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP81_RS24030 (PUP81_24030)	murB	5332293..5333312 (-)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-
PUP81_RS24035 (PUP81_24035)	-	5333309..5333773 (-)	465	WP_124323849.1	low molecular weight protein-tyrosine-phosphatase	-
PUP81_RS24040 (PUP81_24040)	kdsB	5333773..5334537 (-)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP81_RS24045 (PUP81_24045)	-	5334534..5334719 (-)	186	WP_007931663.1	Trm112 family protein	-
PUP81_RS24050 (PUP81_24050)	lpxK	5334743..5335753 (-)	1011	WP_102676843.1	tetraacyldisaccharide 4'-kinase	-
PUP81_RS24055 (PUP81_24055)	-	5335753..5336181 (-)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP81_RS24060 (PUP81_24060)	exbB	5336178..5336813 (-)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP81_RS24065 (PUP81_24065)	comA	5336916..5339147 (-)	2232	WP_124323848.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP81_RS24070 (PUP81_24070)	-	5339295..5339810 (+)	516	WP_025804355.1	DUF2062 domain-containing protein	-
PUP81_RS24075 (PUP81_24075)	-	5339859..5340638 (-)	780	WP_007931651.1	ABC transporter permease	-
PUP81_RS24080 (PUP81_24080)	-	5340635..5341567 (-)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
PUP81_RS24085 (PUP81_24085)	-	5341700..5342323 (-)	624	WP_106696834.1	glutathione S-transferase family protein	-
PUP81_RS24090 (PUP81_24090)	-	5342366..5343025 (-)	660	WP_124323847.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81292.40 Da
• Isoelectric Point: 10.1404

>NTDB_id=790482 PUP81_RS24065 WP_124323848.1 5336916..5339147(-) (comA) [Pseudomonas chlororaphis strain ATCC 17809]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790482 PUP81_RS24065 WP_124323848.1 5336916..5339147(-) (comA) [Pseudomonas chlororaphis strain ATCC 17809]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCCTGGTGCGTTTCGAACTGGAAGGCGGGCGGGCGCGGCGCGGGCGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTCCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTAAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACTGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCTTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCTTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGTTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCACTGCGGTTGATGCTG
GGCACATACGCCGAACCTACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624