Detailed information NTG0790391

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP68_RS10280
• Genome accession: NZ_CP118139
• Coordinates: 2260981..2263212 (+)
• Length: 743 a.a.
• NCBI ID: WP_274320845.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 295781
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2255981..2268212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP68_RS10255 (PUP68_10255)	-	2257103..2257762 (+)	660	WP_053278045.1	transglutaminase-like domain-containing protein	-
PUP68_RS10260 (PUP68_10260)	-	2257805..2258428 (+)	624	WP_053278046.1	glutathione S-transferase family protein	-
PUP68_RS10265 (PUP68_10265)	-	2258561..2259493 (+)	933	WP_053278047.1	ABC transporter ATP-binding protein	-
PUP68_RS10270 (PUP68_10270)	-	2259490..2260269 (+)	780	WP_053278048.1	ABC transporter permease	-
PUP68_RS10275 (PUP68_10275)	-	2260318..2260833 (-)	516	WP_053278049.1	DUF2062 domain-containing protein	-
PUP68_RS10280 (PUP68_10280)	comA	2260981..2263212 (+)	2232	WP_274320845.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP68_RS10285 (PUP68_10285)	exbB	2263315..2263950 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP68_RS10290 (PUP68_10290)	-	2263947..2264375 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP68_RS10295 (PUP68_10295)	lpxK	2264375..2265385 (+)	1011	WP_053278051.1	tetraacyldisaccharide 4'-kinase	-
PUP68_RS10300 (PUP68_10300)	-	2265409..2265594 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP68_RS10305 (PUP68_10305)	kdsB	2265591..2266355 (+)	765	WP_097302592.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP68_RS10310 (PUP68_10310)	-	2266355..2266819 (+)	465	WP_210475030.1	low molecular weight protein-tyrosine-phosphatase	-
PUP68_RS10315 (PUP68_10315)	murB	2266816..2267835 (+)	1020	WP_053278054.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81356.40 Da
• Isoelectric Point: 10.0609

>NTDB_id=790391 PUP68_RS10280 WP_274320845.1 2260981..2263212(+) (comA) [Pseudomonas chlororaphis strain DSM 295781]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPRNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVEHLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKTLAPSAVLISRGHGNGFGHPHPQVVERYRQQGTVIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790391 PUP68_RS10280 WP_274320845.1 2260981..2263212(+) (comA) [Pseudomonas chlororaphis strain DSM 295781]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCTGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCATGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCTGGTGGCCTGGCGGCGCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCGGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATCCAATGGTTGATCGCCATCGGCCTATGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGAACCCTGGATCAGCCTGCTGGTATTGCCACCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGGCTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTGCTGTT
TCGCGGTCTGGCACTGCTGGCTGCCCAATGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAGAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGTCCGCGTTTTGGCGACTCCGATCTGGGCGCCCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGAGCACCTTGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTATCCAGCGCGGCTTGCCAGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTACGTTTTTCCCTGTGGCAATGGGCGGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCTAAGGGCGAGCGATTGCTGCTGACCGGGGATATCGATGCCCAGGCGGAA
CGTGCGCTGTTGAATACCCCGCTGGCTGTCGAGACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGACCCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGTTATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGTACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626