Detailed information NTG0790374

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PUP77_RS15695
• Genome accession: NZ_CP118138
• Coordinates: 3379732..3381060 (-)
• Length: 442 a.a.
• NCBI ID: WP_274321572.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 295782
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3374732..3386060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP77_RS15680 (PUP77_15680)	-	3375094..3378165 (+)	3072	WP_274321570.1	pilus assembly protein	-
PUP77_RS15685 (PUP77_15685)	-	3378179..3378580 (+)	402	WP_025807536.1	type IV pilin protein	-
PUP77_RS15690 (PUP77_15690)	thiO	3378635..3379735 (+)	1101	WP_274321571.1	glycine oxidase ThiO	-
PUP77_RS15695 (PUP77_15695)	pilR	3379732..3381060 (-)	1329	WP_274321572.1	sigma-54-dependent transcriptional regulator	Regulator
PUP77_RS15700 (PUP77_15700)	-	3381334..3381567 (-)	234	WP_274321573.1	PP0621 family protein	-
PUP77_RS15705 (PUP77_15705)	-	3381702..3382724 (-)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
PUP77_RS15710 (PUP77_15710)	rluD	3382877..3383839 (+)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PUP77_RS15715 (PUP77_15715)	pgeF	3383836..3384561 (+)	726	WP_274321574.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48923.28 Da
• Isoelectric Point: 8.2651

>NTDB_id=790374 PUP77_RS15695 WP_274321572.1 3379732..3381060(-) (pilR) [Pseudomonas chlororaphis strain DSM 295782]
MSPRQKVLIVDNDPGIREYLEISLGRMQRHTRSARTLDEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQEAAAQALKAGAIDFLSKPVALARLRELLNSALLGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGSRASRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLAITILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRQIDVQDLRLTPSSAQPAIAPDPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=790374 PUP77_RS15695 WP_274321572.1 3379732..3381060(-) (pilR) [Pseudomonas chlororaphis strain DSM 295782]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATAACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGACGAGGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGCTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAGCCGCGGCCCAGGCCCTGAAGGCCGGTGCTATCGACTTTCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAACTGCTGAACAGCGCCCTGCTCGGATCGACGCCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGATCACGGGCCAGCCGCGCCTTCGTGCC
GATCAACTGCGGAGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGTTTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGCTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCACGCAAGGACGATATCGAACCCTTGGCCATAACCATCCTCGAG
CGCCTGGCGCAGGGCGACGGCCAACAGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGTTACGACTTTCC
CGGCAATGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGACGTGCAGGATC
TGCGCCTGACGCCAAGCAGCGCCCAGCCGGCCATCGCGCCCGACCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGACTAAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.117	100	0.674
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462