Detailed information NTG0790338

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PUP65_RS10245
• Genome accession: NZ_CP118137
• Coordinates: 2231029..2233260 (+)
• Length: 743 a.a.
• NCBI ID: WP_124323848.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCCB 47033
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2226029..2238260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP65_RS10220 (PUP65_10220)	-	2227151..2227810 (+)	660	WP_124323847.1	transglutaminase-like domain-containing protein	-
PUP65_RS10225 (PUP65_10225)	-	2227853..2228476 (+)	624	WP_106696834.1	glutathione S-transferase family protein	-
PUP65_RS10230 (PUP65_10230)	-	2228609..2229541 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
PUP65_RS10235 (PUP65_10235)	-	2229538..2230317 (+)	780	WP_007931651.1	ABC transporter permease	-
PUP65_RS10240 (PUP65_10240)	-	2230366..2230881 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
PUP65_RS10245 (PUP65_10245)	comA	2231029..2233260 (+)	2232	WP_124323848.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PUP65_RS10250 (PUP65_10250)	exbB	2233363..2233998 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PUP65_RS10255 (PUP65_10255)	-	2233995..2234423 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PUP65_RS10260 (PUP65_10260)	lpxK	2234423..2235433 (+)	1011	WP_102676843.1	tetraacyldisaccharide 4'-kinase	-
PUP65_RS10265 (PUP65_10265)	-	2235457..2235642 (+)	186	WP_007931663.1	Trm112 family protein	-
PUP65_RS10270 (PUP65_10270)	kdsB	2235639..2236403 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PUP65_RS10275 (PUP65_10275)	-	2236403..2236867 (+)	465	WP_124323849.1	low molecular weight protein-tyrosine-phosphatase	-
PUP65_RS10280 (PUP65_10280)	murB	2236864..2237883 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81292.40 Da
• Isoelectric Point: 10.1404

>NTDB_id=790338 PUP65_RS10245 WP_124323848.1 2231029..2233260(+) (comA) [Pseudomonas chlororaphis strain NCCB 47033]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=790338 PUP65_RS10245 WP_124323848.1 2231029..2233260(+) (comA) [Pseudomonas chlororaphis strain NCCB 47033]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCCTGGTGCGTTTCGAACTGGAAGGCGGGCGGGCGCGGCGCGGGCGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTCCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTAAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACTGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCTTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCTTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGTTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCACTGCGGTTGATGCTG
GGCACATACGCCGAACCTACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624