Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PUW25_RS24685 Genome accession   NZ_CP118108
Coordinates   5324064..5325020 (-) Length   318 a.a.
NCBI ID   WP_047912652.1    Uniprot ID   A0AAX3N1Q1
Organism   Paenibacillus urinalis strain 2022CK-00829     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5319064..5330020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW25_RS24670 (PUW25_24670) - 5321014..5322087 (-) 1074 WP_274338493.1 siderophore ABC transporter substrate-binding protein -
  PUW25_RS24675 (PUW25_24675) - 5322354..5323121 (-) 768 WP_274338494.1 ABC transporter ATP-binding protein -
  PUW25_RS24680 (PUW25_24680) - 5323118..5324077 (-) 960 WP_274338495.1 iron chelate uptake ABC transporter family permease subunit -
  PUW25_RS24685 (PUW25_24685) ceuB 5324064..5325020 (-) 957 WP_047912652.1 ABC transporter permease Machinery gene
  PUW25_RS24690 (PUW25_24690) - 5325256..5326791 (-) 1536 WP_274338496.1 malate:quinone oxidoreductase -
  PUW25_RS24695 (PUW25_24695) - 5327211..5328305 (+) 1095 WP_274338497.1 iron-siderophore ABC transporter substrate-binding protein -
  PUW25_RS24700 (PUW25_24700) - 5328382..5329482 (+) 1101 WP_274338498.1 iron-siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34769.00 Da        Isoelectric Point: 9.8946

>NTDB_id=790251 PUW25_RS24685 WP_047912652.1 5324064..5325020(-) (ceuB) [Paenibacillus urinalis strain 2022CK-00829]
MRLWMLIAAAVVLSFVSLFIGAIDINIFDLFNGNADKMHIFLISRVPRLMAIILAGIGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFANVSYTWQVIFCFVFALAGTLVFMRILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEGDLL
QNISSWLMGSFTLVIAGRYELLYLSVPAVILAYLYANKFTVAGMGEDFAKNLGLSYKTVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAALGVVFLLACDIVGRIVIHPFEIPVNVTVAVIGSAIFLFMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=790251 PUW25_RS24685 WP_047912652.1 5324064..5325020(-) (ceuB) [Paenibacillus urinalis strain 2022CK-00829]
ATGAGACTATGGATGTTAATAGCGGCAGCCGTAGTCCTGTCTTTTGTTTCGCTGTTTATTGGTGCGATTGATATTAACAT
CTTTGACTTGTTCAACGGTAATGCGGATAAGATGCACATTTTCCTTATCAGTCGGGTACCCCGTTTAATGGCAATCATAC
TGGCAGGCATCGGCATGAGTATCGCGGGATTGATTATGCAATCCTTAAGTCGCAACAAATTTGTATCACCCACAACAGCA
GGCACGCTTGACGCAGCGAAGCTGGGAATCCTGATATCAATGCTCTTTTTTGCGAATGTAAGCTATACGTGGCAGGTCAT
TTTCTGCTTCGTCTTTGCACTTGCAGGTACTCTGGTATTTATGAGAATTCTGGATCGAATTAAGTTTAAGGATGTTATCT
TCGTACCGCTTATCGGGATTATGTACGGTAATATTCTGTCGTCGATCACAACCTTTTTCGCTTACGAAGGTGATTTGCTT
CAGAATATCTCTTCATGGCTGATGGGCAGCTTCACCCTTGTTATTGCAGGGCGTTATGAGCTCTTATATCTGAGTGTTCC
AGCTGTTATTCTGGCGTATTTATATGCCAACAAATTTACGGTTGCAGGAATGGGCGAGGATTTTGCCAAGAATCTGGGTC
TGAGCTACAAAACAGTGCTGAATATAGGACTTATCTTAGTTGCGATTATTGCTACAACTGTTGTGCTGACCGTTGGTGTT
ATACCGTTCTTGGGACTTATTGTTCCTAACATTGTGTCACTGTATCTGGGGGATAATCTGCGCAAAACCATTCCGCATAC
CGCAGCACTTGGTGTAGTATTCCTGTTGGCTTGTGATATTGTGGGGCGCATTGTAATTCATCCTTTTGAAATTCCAGTTA
ACGTAACGGTAGCGGTAATTGGCAGTGCGATCTTCTTATTTATGTTGTTTAGGGGGAGAGCATATGCAAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.696

99.371

0.553