Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PTI97_RS13745 Genome accession   NZ_CP118099
Coordinates   2683886..2685262 (-) Length   458 a.a.
NCBI ID   WP_026824809.1    Uniprot ID   -
Organism   Exiguobacterium marinum strain a-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2678886..2690262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTI97_RS13720 (PTI97_13720) cysE 2679052..2679741 (-) 690 WP_026824813.1 serine O-acetyltransferase -
  PTI97_RS13725 (PTI97_13725) gltX 2679999..2681456 (-) 1458 WP_200868291.1 glutamate--tRNA ligase -
  PTI97_RS13730 (PTI97_13730) ispF 2681502..2681975 (-) 474 WP_026824811.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PTI97_RS13735 (PTI97_13735) ispD 2681972..2682652 (-) 681 WP_026824810.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PTI97_RS13740 (PTI97_13740) - 2682708..2683772 (-) 1065 WP_012727703.1 PIN/TRAM domain-containing protein -
  PTI97_RS13745 (PTI97_13745) radA 2683886..2685262 (-) 1377 WP_026824809.1 DNA repair protein RadA Machinery gene
  PTI97_RS13750 (PTI97_13750) - 2685320..2687755 (-) 2436 WP_026824808.1 ATP-dependent Clp protease ATP-binding subunit -
  PTI97_RS13755 (PTI97_13755) - 2687780..2688823 (-) 1044 WP_026824807.1 protein arginine kinase -
  PTI97_RS13760 (PTI97_13760) - 2688823..2689257 (-) 435 WP_026824806.1 UvrB/UvrC motif-containing protein -
  PTI97_RS13765 (PTI97_13765) - 2689263..2689739 (-) 477 WP_026824805.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49875.48 Da        Isoelectric Point: 6.8956

>NTDB_id=790153 PTI97_RS13745 WP_026824809.1 2683886..2685262(-) (radA) [Exiguobacterium marinum strain a-1]
MAKIKTKYVCQSCGYESAKWMGRCPGCNEWNTLVEEFVEEKKAKRGAAFVHSSSRQLKPERLSNVVSQEETRVHTNSREF
DRVLGGGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGKKVLYISGEESLKQTKLRAERLGLPTEDLFVLAETDMLMIE
RVIDEEQPGFVIIDSIQTVYMDEIQSAPGSVSQVRECTAALMKIAKTRGIAVFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMKESGLEEVLNPSEIFLEERTAGVSGSTVVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNRVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICISIASSFRDRPTRPTDVCIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNMGGWTAPAGIEVVGVGTVDEALQLAIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=790153 PTI97_RS13745 WP_026824809.1 2683886..2685262(-) (radA) [Exiguobacterium marinum strain a-1]
ATGGCCAAAATTAAAACGAAATACGTCTGCCAATCGTGTGGATATGAATCAGCGAAGTGGATGGGGCGCTGTCCAGGTTG
TAATGAATGGAATACGCTTGTGGAAGAATTTGTGGAAGAAAAGAAAGCCAAACGCGGTGCAGCATTTGTCCATAGTTCGT
CTCGACAATTGAAACCGGAACGTCTATCAAACGTCGTCTCACAAGAAGAGACGCGTGTGCACACGAATAGTCGTGAATTT
GACCGTGTGCTCGGTGGAGGAATCGTCCCGGGTTCCCTTGTCTTAGTCGGGGGTGACCCAGGAATCGGAAAGTCGACGAT
TTTGCTACAAGTCAGTGCCCATTTAGCCCATAGCGGCAAAAAAGTGTTATATATTTCGGGTGAAGAGTCGCTCAAACAAA
CGAAACTGCGCGCGGAACGACTCGGCTTACCGACCGAAGACTTGTTCGTGCTCGCGGAGACAGACATGCTGATGATTGAA
CGGGTCATCGATGAAGAACAGCCGGGGTTTGTCATCATCGACTCGATTCAGACGGTGTATATGGATGAGATTCAATCTGC
TCCGGGCAGTGTGTCACAAGTACGAGAATGTACGGCGGCGCTCATGAAGATTGCGAAAACGCGAGGGATTGCTGTCTTCA
TTGTCGGACACGTGACGAAACAAGGGTCGATTGCAGGACCGCGCTTACTCGAACACATGGTAGATGCGGTGCTTTACTTT
GAAGGCGAACGTCATCATACATTCCGTATTTTGCGGGCGGTGAAGAATCGGTTTGGTTCAACGAATGAAATTGGGATTTT
CGAGATGAAAGAGAGTGGGTTAGAAGAAGTCCTCAACCCGTCCGAAATCTTTTTAGAAGAGCGAACCGCAGGGGTATCCG
GCTCTACGGTCGTTGCTTCGATGGAAGGGACACGGACGGTGCTCGTCGAACTGCAGGCACTTATCTCCCCTACCTCATTC
GGGAACCCGAGACGAATGGCGACGGGAATCGATCAAAATCGGGTCGCGCTTCTCATGGCCGTGCTCGAGAAACGATCCGG
TCTTCTGCTTCAAACACAGGATGCTTATTTGAAAGCGGCCGGTGGTGTCAAATTGGATGAACCGGCGATTGACCTTGCGA
TTTGTATTTCAATCGCCTCTAGTTTTCGCGATCGCCCGACTCGGCCGACGGATGTCTGCATCGGAGAAGTCGGATTGACG
GGAGAAGTGCGGCGCGTATCACGAATAGAACAACGTGTTGCCGAGGCGGCAAAGTTAGGGTTTACAAGGGCCATCATCCC
GAAAAATAATATGGGTGGATGGACCGCTCCGGCAGGGATTGAGGTGGTCGGTGTCGGAACAGTGGATGAAGCACTCCAGT
TGGCGATTCCATTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.684

99.563

0.734
  radA Streptococcus mitis SK321

61.589

98.908

0.609
  radA Streptococcus mitis NCTC 12261

61.589

98.908

0.609
  radA Streptococcus pneumoniae Rx1

61.589

98.908

0.609
  radA Streptococcus pneumoniae D39

61.589

98.908

0.609
  radA Streptococcus pneumoniae R6

61.589

98.908

0.609
  radA Streptococcus pneumoniae TIGR4

61.589

98.908

0.609