Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PTI97_RS08285 Genome accession   NZ_CP118099
Coordinates   1602504..1604201 (-) Length   565 a.a.
NCBI ID   WP_274356223.1    Uniprot ID   -
Organism   Exiguobacterium marinum strain a-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1597504..1609201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTI97_RS08265 (PTI97_08265) yqiS 1598078..1598974 (-) 897 WP_274357772.1 phosphate butyryltransferase -
  PTI97_RS08270 (PTI97_08270) - 1599096..1600733 (-) 1638 WP_026825752.1 sigma-54-dependent Fis family transcriptional regulator -
  PTI97_RS08275 (PTI97_08275) - 1600868..1601116 (+) 249 WP_274356221.1 DUF2627 family protein -
  PTI97_RS08280 (PTI97_08280) spo0A 1601772..1602503 (-) 732 WP_274356222.1 sporulation transcription factor Spo0A -
  PTI97_RS08285 (PTI97_08285) recN 1602504..1604201 (-) 1698 WP_274356223.1 DNA repair protein RecN Machinery gene
  PTI97_RS08290 (PTI97_08290) ahrC 1604215..1604664 (-) 450 WP_026825748.1 transcriptional regulator AhrC/ArgR -
  PTI97_RS08295 (PTI97_08295) - 1604820..1605635 (-) 816 WP_274356224.1 TlyA family RNA methyltransferase -
  PTI97_RS08300 (PTI97_08300) dxs 1605642..1607534 (-) 1893 WP_274356225.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PTI97_RS08305 (PTI97_08305) - 1607658..1608536 (-) 879 WP_274356226.1 polyprenyl synthetase family protein -
  PTI97_RS08310 (PTI97_08310) xseB 1608533..1608757 (-) 225 WP_026825744.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63345.04 Da        Isoelectric Point: 4.8980

>NTDB_id=790143 PTI97_RS08285 WP_274356223.1 1602504..1604201(-) (recN) [Exiguobacterium marinum strain a-1]
MLAELSIKQFAIIDELNITFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFMIEPNHPVIEAA
NQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMTLSTLREFGRLLVDIHGQHEHQHLMEAEFHLGILDHFAEKEVGPLLE
EYQAAYAAWKKIANELKRLSQSEQELAQRMDLLSFQTKEIEAAELKPGEEQALTEERDELANFERIHQHIRLSYEAVAED
SNGLDQIGVAMREMGEASQLSTSLASVSETISNAYYLLEDAKFQLRDQLDSLEFDPIRLDEIESRLALFQQLKRKYGTTI
EEVIAYGERVSEELKSMTNREEHLQTLSDELVRLEKAAKETGIKLSAARKVAAKSLEQAIHRELKELYMEKTAFEVRFRS
TSLKQDGLDDVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETDDRTKTNVDSLNHESRIDELGRMIAGAQMTNLTKQHVEELLEMSQQVKQKF
IKGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=790143 PTI97_RS08285 WP_274356223.1 1602504..1604201(-) (recN) [Exiguobacterium marinum strain a-1]
ATGTTAGCAGAACTATCAATCAAACAGTTTGCGATTATCGACGAGTTAAACATTACGTTTAATCGAGGTATGACCGTTCT
CACGGGTGAAACGGGTGCCGGTAAATCAATTTTGTTAGATGCGATTGGGTTGCTTGTTGGAGGACGAGGCTCGAGTGAGT
TTGTTCGCTACGGTCAGGACAAGGCCGAAATCGAAGGGTTGTTCATGATTGAACCAAATCATCCCGTCATTGAAGCGGCC
AATCAATATGGAATTGATGTTGAGGACGGGACTGTCATACTACGTCGAGACTTACATAGTAGTGGAAAAAGTGTCTGTCG
GGTGAATGGTAAAATGATGACGCTCTCGACGTTGCGTGAATTCGGGCGACTTCTCGTCGATATTCATGGGCAACATGAGC
ATCAACATCTGATGGAAGCGGAATTTCACTTAGGAATTCTCGATCACTTTGCCGAGAAGGAAGTAGGCCCTCTATTAGAG
GAATATCAAGCAGCATATGCAGCTTGGAAAAAAATCGCCAATGAACTGAAGCGCCTTAGCCAAAGTGAGCAAGAACTCGC
GCAGCGGATGGATTTGTTGTCGTTCCAAACAAAAGAGATCGAGGCGGCAGAATTAAAGCCGGGTGAAGAACAGGCGCTGA
CGGAAGAGCGTGATGAATTAGCCAACTTTGAGCGCATCCATCAACATATCCGTCTTTCTTATGAGGCGGTTGCCGAGGAC
TCGAACGGACTTGACCAAATTGGCGTTGCGATGCGTGAAATGGGCGAGGCATCACAGCTTTCCACCTCTCTTGCTTCTGT
ATCCGAGACGATCTCCAACGCATACTATCTGCTAGAAGACGCGAAATTTCAATTGCGCGATCAATTAGATTCGCTAGAGT
TTGATCCGATTCGATTGGATGAGATCGAGTCGAGATTAGCCCTTTTCCAGCAGCTAAAACGAAAGTATGGAACGACAATC
GAAGAAGTCATCGCATATGGAGAACGAGTTTCCGAGGAACTTAAATCGATGACGAATCGAGAAGAACATTTGCAGACGTT
GTCAGATGAGCTTGTTCGATTAGAGAAAGCTGCAAAAGAGACTGGAATAAAACTATCTGCAGCCCGCAAAGTTGCAGCAA
AGTCGCTGGAGCAGGCGATACATCGTGAATTAAAAGAACTGTACATGGAAAAAACAGCATTTGAAGTTCGTTTCCGCTCA
ACGTCTCTAAAACAAGACGGATTAGATGATGTAGAGTTTTACATGATGACAAATGTCGGTGAACCGTTTAAACCGCTTGC
GAAAGTCGCTTCAGGCGGTGAGCTTTCCCGCGTCATGCTCGCACTCAAGTCCATTTTTTCAAGAACCGTCGGAGTGGCCT
CGATTATTTTTGATGAAGTCGATACAGGTGTGTCCGGCCGTGTCGCCCAAGCGATGGGGGAGAAGATTTTCCGTCTATCT
GTCGGGTCACAGGTGCTGTGTATCACTCACTTGGCACAAGTCGCCGCGATGGCAGATCAACACCTTTACATTACGAAAAC
AGAAACGGATGACCGAACGAAAACGAATGTCGACTCTCTCAATCATGAGAGCCGAATCGACGAATTGGGTCGAATGATTG
CTGGAGCTCAAATGACGAACTTGACGAAACAACACGTTGAAGAGTTACTTGAGATGTCACAGCAAGTAAAACAGAAGTTC
ATCAAAGGAGTGTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.799

100

0.556