Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7644_RS11210 Genome accession   NZ_CP131645
Coordinates   2106614..2106757 (-) Length   47 a.a.
NCBI ID   WP_050171221.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101614..2111757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS11190 (Q7644_11250) pilA 2102993..2104246 (+) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  Q7644_RS11195 (Q7644_11255) - 2104305..2104529 (-) 225 WP_169301222.1 hypothetical protein -
  Q7644_RS11200 (Q7644_11260) - 2104543..2105301 (-) 759 Protein_2168 opacity family porin -
  Q7644_RS11205 (Q7644_11265) - 2105734..2106245 (-) 512 Protein_2169 pilin -
  Q7644_RS11210 (Q7644_11270) pilE 2106614..2106757 (-) 144 WP_050171221.1 hypothetical protein Machinery gene
  Q7644_RS11215 (Q7644_11275) - 2107060..2107166 (-) 107 Protein_2171 pilin -
  Q7644_RS11220 (Q7644_11280) lpxC 2107295..2108218 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7644_RS11225 (Q7644_11285) - 2108877..2109284 (-) 408 Protein_2173 pilin -
  Q7644_RS11230 (Q7644_11290) - 2109710..2110036 (-) 327 Protein_2174 pilin -
  Q7644_RS11235 (Q7644_11300) - 2110393..2110769 (-) 377 Protein_2175 pilin -
  Q7644_RS11240 (Q7644_11305) - 2110947..2111300 (-) 354 Protein_2176 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5049.51 Da        Isoelectric Point: 6.1895

>NTDB_id=790001 Q7644_RS11210 WP_050171221.1 2106614..2106757(-) (pilE) [Neisseria gonorrhoeae strain 2004S05-027]
MTGFNDAAGNEKIDTKHLPSTCRDESSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=790001 Q7644_RS11210 WP_050171221.1 2106614..2106757(-) (pilE) [Neisseria gonorrhoeae strain 2004S05-027]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.333

63.83

0.468