Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q7644_RS10360 Genome accession   NZ_CP131645
Coordinates   1953413..1956508 (-) Length   1031 a.a.
NCBI ID   WP_341931107.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1948413..1961508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS10345 (Q7644_10410) - 1948774..1949316 (+) 543 Protein_2004 ATPase, T2SS/T4P/T4SS family -
  Q7644_RS10350 (Q7644_10415) yccS 1949502..1951652 (+) 2151 WP_003697785.1 YccS family putative transporter -
  Q7644_RS10355 (Q7644_10420) - 1952278..1952562 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  Q7644_RS10360 (Q7644_10425) pilC 1953413..1956508 (-) 3096 WP_341931107.1 PilC family type IV pilus tip adhesin Machinery gene
  Q7644_RS10365 (Q7644_10430) - 1957351..1957614 (+) 264 WP_017147189.1 hypothetical protein -
  Q7644_RS10370 (Q7644_10435) gnd 1957694..1959142 (+) 1449 WP_047918023.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  Q7644_RS10375 (Q7644_10440) waaA 1959205..1960476 (+) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  Q7644_RS10380 (Q7644_10445) - 1960517..1960966 (+) 450 WP_003692085.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 1031 a.a.        Molecular weight: 112453.70 Da        Isoelectric Point: 9.9176

>NTDB_id=789996 Q7644_RS10360 WP_341931107.1 1953413..1956508(-) (pilC) [Neisseria gonorrhoeae strain 2004S05-027]
MNKTLKRRVFRHTALYTAILMFSHTGGGGGQAQARDYAIIMNGRNQPEVKSNVPSSIKDKDRKRTFSHTSQTNWRGQQNN
FISFDNSDELVSQQSGTAVFGTATYLPPYGKVSGFDTDRLKKRNNAVDWIRTTRIALAGYSYEGVVCRSGTGCPKLVYKT
RFSFDNPDLVKNAGKLDRYTDLSRENSPIYKLKDYPWLGVSFNLSSENTVKDSKLSNKLISSFSESNNNQTIVSTTEDHP
ISLGGSQREHTAVAYYLNAKLHLLDKKGIGDIAPGKTVRLGLLKPSIDVRKGNTGLSGILSFNATWDIKDTGQIPVKLGL
QVKAGRCINKPNPNKNTKAPSPALTAPALWFGPRQDGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKPLS
ENEIKSKEPRFNGRQTVIRLDSGVQLIKLNGSKDEVVIFGNNGNNGTFGIVKEANVNLEADEWKKVLLPWTVRGPDNDNK
FKLINQKPDRYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATSANDGMVHIFKKTGTDERSYNLKLSYIPGTMERKDIEG
NDSDLAKELRTFAEKGYVGDRYGVDGGFVLRQVNLNGQDRVFMFGAMGLGGRGAYALDLSKINGNYPAAAPLFDVKDGDN
NGKNRVEVKLGYTVGTPQIGKTQNGTYSAFLASGYAAKKIDDSTNKTALYVYDLKDTLGTPIAKIEAPGGKGGLSSPTLV
DKDLDGTVDIAYAGDRGGNMYRFDLSNSDPNKWSAKAIFEGTKPITSAPAVSRLKDKRVVIFGTGSDLTEDDVLDTKEQY
IYGIFDDDKGTGTVKVTVQNGTAGGLLEQNLMQENKTLFLNKRSDGSGSKGWAVKLTGGQRVTVKPTVVLRTAFVTIRKY
NDGGCGAETAILGINTADGGALTPRSARPIVPEANTAVAQYSGHKTTSKGKSIPIGCMEKGGKTVCPNGYVYDKPVNVRY
LDETETDGFSTTADGDAGGSGIDPADRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3096 bp        

>NTDB_id=789996 Q7644_RS10360 WP_341931107.1 1953413..1956508(-) (pilC) [Neisseria gonorrhoeae strain 2004S05-027]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAAGCCCGTGACTACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTAAAGTCGAATGTGC
CATCTTCAATAAAGGACAAAGACAGGAAGCGGACATTTAGCCATACGAGCCAGACAAACTGGCGGGGCCAACAAAACAAT
TTTATCTCATTCGACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCC
GCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGGCTGAAAAAGCGCAACAATGCCGTTGATTGGATTCGTACCACCC
GCATCGCGCTGGCAGGCTACAGCTACGAAGGTGTCGTATGCAGAAGCGGCACAGGCTGTCCCAAACTTGTCTATAAAACC
CGATTTTCCTTCGATAATCCCGACTTGGTAAAAAATGCGGGCAAGCTGGATAGGTACACAGACCTAAGCCGCGAAAATTC
GCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTATCTTTCAATTTGAGCAGCGAGAATACCGTCAAAGATAGCA
AATTATCCAACAAATTGATATCTTCTTTTAGTGAAAGCAATAATAATCAAACCATCGTCTCTACGACAGAAGACCACCCT
ATTTCCCTTGGCGGCTCGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAA
AGGGATTGGAGATATCGCGCCAGGCAAAACAGTGCGGTTGGGTCTCTTGAAGCCGAGCATCGATGTGCGGAAAGGAAATA
CGGGGCTTAGCGGCATTCTATCTTTTAATGCTACGTGGGACATTAAAGATACCGGGCAGATTCCGGTCAAGCTCGGCCTG
CAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCC
CGCGCTGTGGTTCGGACCTAGGCAAGATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGA
GCAGCAAAATTTTCCTGCAAAACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCCTTGAGT
GAGAATGAGATTAAAAGTAAAGAGCCGCGTTTCAACGGAAGGCAGACCGTCATCCGATTGGATAGCGGCGTACAGCTGAT
CAAACTGAATGGAAGCAAGGATGAGGTCGTCATTTTTGGAAACAACGGCAACAACGGCACTTTCGGCATTGTTAAGGAAG
CGAACGTCAATCTTGAAGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAA
TTTAAATTAATTAACCAAAAACCAGACAGATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGGCGA
CATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAA
AAACCGGCACGGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGC
AATGACTCCGACCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGG
CTTTGTCTTGCGTCAAGTTAACTTAAACGGACAAGACCGCGTGTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCG
CATACGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAGATGGCGATAAT
AACGGCAAAAATCGCGTGGAAGTGAAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCAAAACGGCACATA
CTCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAAAAATTGACGACTCAACAAATAAAACCGCGCTGTATGTATATGATT
TGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGCACCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTG
GATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAA
TTCCGATCCTAATAAATGGTCTGCAAAGGCTATTTTCGAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGAC
TGAAAGACAAACGCGTGGTTATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAAGAACAATAT
ATTTACGGTATCTTTGACGACGATAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGCAGGCGGGCTGCT
CGAGCAAAACCTTATGCAGGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGG
TGAAATTGACAGGCGGACAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAAATAT
AACGACGGCGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGC
GCGCCCGATTGTGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGACAACCTCCAAAGGCAAATCCATCC
CTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTAC
CTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGACAG
GCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATA
TTACCGGCCCGATGTGTGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(505-841)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.433

100

0.739