Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q7645_RS09845 Genome accession   NZ_CP131641
Coordinates   1873282..1876380 (+) Length   1032 a.a.
NCBI ID   WP_341966412.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1868282..1881380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS09825 (Q7645_09865) - 1868977..1869426 (-) 450 WP_003688065.1 CopD family copper resistance protein -
  Q7645_RS09830 (Q7645_09870) waaA 1869467..1870738 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  Q7645_RS09835 (Q7645_09875) gnd 1870801..1872249 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  Q7645_RS09840 (Q7645_09880) - 1872329..1872592 (-) 264 WP_017147189.1 hypothetical protein -
  Q7645_RS09845 (Q7645_09885) pilC 1873282..1876380 (+) 3099 WP_341966412.1 PilC family type IV pilus tip adhesin Machinery gene
  Q7645_RS09850 (Q7645_09890) - 1877350..1877634 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  Q7645_RS09855 (Q7645_09895) yccS 1878114..1880264 (-) 2151 WP_003697785.1 YccS family putative transporter -

Sequence

Protein


Download         Length: 1032 a.a.        Molecular weight: 112475.51 Da        Isoelectric Point: 9.6740

>NTDB_id=789925 Q7645_RS09845 WP_341966412.1 1873282..1876380(+) (pilC) [Neisseria gonorrhoeae strain 2010C02-038]
MNKTLKRQVFRHTALYAAILMFSHTGGGGAMAQTYKYAIVMNAQNQPEVRRNGQYSTIKGKDREREYTYHNTRGGGGSVS
FNNTDTLVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAAGWIRTTRIALAGYSYADVVCRDITGCPKLVYETKFA
FGQQGLQRKGSKLDIYEDKSRDNSPIYKLKDHPWLGVSFNLGSEGTAKDGRSSSKLVSSFDENNSNSNQNLVYTTRDHPI
SLGDSQREHTAVAYYLNAKLHLLDKKGIEDIAQGKIVDLGILKPHVETTGRSFLNFWAKWDIKDNGQIPVKLGLPTVKAG
RCINKPNPNPKSALSPALTAPALWFGPAQNGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKSLNDGEIQS
RQPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPGNDDKF
KSINRESDKYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRQYFDN
DTSALKGSTLAQELRTFAEKGYVGDRYGVDGGFVLRQVEDRVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKDGD
NNGKNRVEVKLGYTVGTPQIGKIRNGKYAAFLASGYAAKQIASQENKTALYVYDLKDTLGTPIAKIEVKGGKGGLSSPTL
VDKDLDGIVDIAYAGDRGGNMYRFDLSDSNPDKWSVRTIFQGTKPITSAPAVSRLADKRVVIFGTGSDLSEQDVLDTEEQ
YIYGIFDDDTEAGNVKVDPKGLGGGLLEQVLSEENKILFLTNNKASGGSNGKGWVVKLKEGQRVTVKPTVVLRTAFVTIR
KYKDDGCGADTAILGINTADGGALTPRSARPIVPDHNSVAQYSGHKKTAGGKSVPIGCMWKNSKTVCPNGYVYDKPVNVR
YLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3099 bp        

>NTDB_id=789925 Q7645_RS09845 WP_341966412.1 1873282..1876380(+) (pilC) [Neisseria gonorrhoeae strain 2010C02-038]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACGTATAAATACGCTATTGTGATGAACGCGCAAAACCAGCCCGAGGTACGGCGGAATGGGC
AATATTCAACAATAAAGGGCAAAGACAGGGAGCGCGAATATACTTATCATAACACACGAGGAGGAGGAGGCTCTGTCTCA
TTCAACAATACCGATACCCTTGTTTCCCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGG
CAAGGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGCCGGTTGGATTCGTACCACCCGCATCGCGC
TGGCAGGCTACAGCTACGCCGATGTCGTATGCAGAGACATCACAGGCTGTCCCAAACTTGTCTATGAGACCAAATTTGCC
TTCGGTCAACAAGGGTTGCAAAGAAAGGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGACAATTCGCCCATTTA
CAAATTGAAGGATCATCCCTGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGGGTACCGCCAAAGATGGCAGATCATCCA
GCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACACGAGACCACCCTATT
TCCCTTGGCGACTCGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGG
GATTGAAGATATCGCCCAAGGCAAAATAGTGGATTTGGGTATCTTGAAACCGCACGTCGAGACGACAGGACGAAGCTTTC
TAAATTTTTGGGCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTCGGCCTGCCGACAGTCAAAGCAGGC
CGCTGCATCAACAAACCGAACCCCAATCCCAAATCAGCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCCC
TGCGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGACAGTTCGAGCAGCAAAATTTTCCTGC
AAAACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATTCAAAGT
CGACAGCCGAGTTTCAACGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAAACTGAATGGAAGCAA
GGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGA
ACGTCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGGTAATGACGATAAATTT
AAATCAATTAACCGAGAATCAGACAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGGCGACAT
CGTCAACAGCCCCATCGTGGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAA
ACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAAC
GACACTTCCGCTCTCAAAGGCTCCACCCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTA
CGGCGTGGACGGCGGCTTTGTCTTGCGTCAAGTTGAAGACCGCGTGTTTATGTTCGGCGCGATGGGTTTTGGCGGCAGAG
GCGCGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCCCCCCTGTTTGATGTCAAAGATGGCGAT
AATAACGGCAAAAATCGCGTGGAAGTGAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCGCAACGGCAA
ATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATG
ATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTG
GTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAG
CGATTCCAATCCTGATAAATGGTCTGTACGCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCC
GACTGGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGAGTGAACAGGATGTACTCGATACGGAAGAACAA
TATATTTACGGTATCTTCGACGACGATACGGAGGCGGGTAATGTAAAGGTAGACCCCAAAGGTTTGGGAGGCGGGCTGCT
CGAGCAAGTGCTTAGCGAGGAAAATAAAATCTTGTTCCTGACAAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGCT
GGGTAGTGAAATTGAAGGAAGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGC
AAGTATAAAGACGACGGCTGCGGCGCGGATACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAG
AAGCGCGCGCCCGATTGTGCCGGATCACAATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCG
TCCCCATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGT
TATCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGG
CAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGG
ATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(504-844)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.175

100

0.736