Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q7645_RS00280 Genome accession   NZ_CP131641
Coordinates   53638..56811 (-) Length   1057 a.a.
NCBI ID   WP_341966453.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48638..61811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS00255 (Q7645_00250) - 49552..49941 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  Q7645_RS00260 (Q7645_00255) - 50104..50271 (-) 168 WP_003687280.1 glyoxalase -
  Q7645_RS00265 (Q7645_00260) - 50199..50483 (-) 285 WP_003687282.1 VOC family protein -
  Q7645_RS00270 (Q7645_00265) carA 50537..51670 (-) 1134 WP_003694721.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  Q7645_RS00275 (Q7645_00270) - 52384..52668 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  Q7645_RS00280 (Q7645_00275) pilC 53638..56811 (-) 3174 WP_341966453.1 PilC family type IV pilus tip adhesin Machinery gene
  Q7645_RS00285 (Q7645_00280) apbC 58300..59379 (-) 1080 WP_050157562.1 iron-sulfur cluster carrier protein ApbC -
  Q7645_RS00295 (Q7645_00290) - 59753..60262 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  Q7645_RS00300 (Q7645_00295) nadR 60603..61043 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  Q7645_RS00305 (Q7645_00300) hpaC 61159..61659 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1057 a.a.        Molecular weight: 115717.36 Da        Isoelectric Point: 9.9408

>NTDB_id=789865 Q7645_RS00280 WP_341966453.1 53638..56811(-) (pilC) [Neisseria gonorrhoeae strain 2010C02-038]
MNKTLKRQVFRHTALYTAILMFSHTGGGGAMAQTRKYAIVMNERKQPEVKQEGQYSQSVLKDKGRERTFSHTSQKNYLGI
TSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDADALKERNNAVDWIRTTRPGLAGYSYAGIRCGSAQDCPKLT
YKTRFSFGNPDLLKTGGRLDKHTESSRENSPIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVYT
TEGHRISLGSQQRETTAMAYYLNAKLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDTGQITV
KLGLPTVKAGRCINKPNPNPKSALSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRHSL
AALNAQDIKSREPNFNSRQTVIRLPGGVYKINSGKNGGRVAGINGNDGKNDTFGIFKDRLVTPVADEWSEVLLPWTARYY
GNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHIFKKNGGSDERSY
NLKLSYIPGTMPRQYFDNDTSALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAY
ALDLTKIDSNNLTGVSMFDVKDGDNNGKNRVEVKLGYTVGTPQIGKIRNGKYAAFLASGYAAKEIGGPTNKTALYVYDLK
NTLGTPIAKIEVKDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSNPDKWSVRTIFQGTKPITSAPAVSRLA
DKRVVIFGTGSDLSEQDVLDTEEQYIYGIFDDDTEAGNVKVDPKGLGGGLLEQVLSEENKILFLTNNKASGGSNGKGWVV
KLKEGQRVTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHNSVAQYSGHKKTAGGKSVP
IGCMWKNSKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDI
TGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3174 bp        

>NTDB_id=789865 Q7645_RS00280 WP_341966453.1 53638..56811(-) (pilC) [Neisseria gonorrhoeae strain 2010C02-038]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCGTAAATACGCTATTGTGATGAACGAGCGAAAGCAGCCCGAGGTAAAGCAGGAGGGTC
AATATAGTCAATCAGTATTAAAGGACAAAGGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACTACCTCGGCATC
ACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCAACAATGCCGTCGATTGGATTC
GTACCACCCGGCCCGGGCTGGCAGGCTACAGCTACGCCGGTATCCGTTGCGGAAGTGCCCAAGACTGTCCCAAACTTACC
TATAAAACCCGATTTTCCTTCGGTAATCCCGACTTGCTAAAAACAGGAGGCAGGCTGGATAAGCACACAGAGTCAAGCCG
CGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGGCGAGGGTACCGCCA
AAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGGCCACCGTATTTCCCTTGGCAGCCAGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCTGCA
CCTGCTGGACAAAAAAGGGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGA
AGACACAAAATACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATACCGGGCAGATTACGGTC
AAGCTCGGCCTGCCGACAGTCAAAGCAGGCCGCTGCATCAACAAACCGAACCCCAATCCCAAATCAGCCCTTTCGCCGGC
ACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACC
CCGGCAGCTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTC
GCCGCTTTGAATGCGCAGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGGCGG
CGTGTACAAGATCAACTCGGGCAAGAACGGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTTTCG
GCATCTTCAAGGACAGGCTCGTCACACCTGTGGCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCCCGGTATTAC
GGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATA
CCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCG
ACGGGTATTTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCAGTGATGAACGCAGCTAC
AATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGACTCCAC
CCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGC
GCCGCATTACAGATGACCAGGACAGGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCATAC
GCCTTGGATTTGACCAAAATCGACAGCAACAACCTGACCGGCGTTTCCATGTTTGATGTCAAAGATGGCGATAATAACGG
CAAAAATCGCGTGGAAGTGAAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAATCCGCAACGGCAAATACGCCG
CCTTCCTCGCCTCCGGTTATGCGGCTAAAGAAATTGGCGGCCCAACAAATAAAACCGCGCTGTATGTATATGATTTGAAA
AACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAA
AGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCA
ATCCTGATAAATGGTCTGTACGCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCA
GACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGAGTGAACAGGATGTACTCGATACGGAAGAACAATATATTTA
CGGTATCTTCGACGACGATACGGAGGCGGGTAATGTAAAGGTAGACCCCAAAGGTTTGGGAGGCGGGCTGCTCGAGCAAG
TGCTTAGCGAGGAAAATAAAATCTTGTTCCTGACAAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGCTGGGTAGTG
AAATTGAAGGAAGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTTACCATCCGCAGCTATAC
GGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCG
CGCGCCCGATTGTGCCGGATCACAATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCGTCCCC
ATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTACCT
GGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAA
AACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATT
ACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(536-868)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.737

100

0.702