Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PUW52_RS08280 Genome accession   NZ_CP118078
Coordinates   1650833..1652599 (-) Length   588 a.a.
NCBI ID   WP_274984302.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645833..1657599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS08260 (PUW52_08260) manA 1646878..1647822 (-) 945 WP_024052685.1 mannose-6-phosphate isomerase, class I -
  PUW52_RS08265 (PUW52_08265) - 1647853..1648579 (-) 727 Protein_1581 GntR family transcriptional regulator -
  PUW52_RS08270 (PUW52_08270) - 1648613..1648738 (-) 126 Protein_1582 PTS cellobiose transporter subunit IIC -
  PUW52_RS08275 (PUW52_08275) rcrQ 1649083..1650843 (-) 1761 WP_024052689.1 ABC transporter ATP-binding protein Regulator
  PUW52_RS08280 (PUW52_08280) rcrP 1650833..1652599 (-) 1767 WP_274984302.1 ABC transporter ATP-binding protein Regulator
  PUW52_RS08285 (PUW52_08285) - 1652592..1653050 (-) 459 WP_024052691.1 MarR family winged helix-turn-helix transcriptional regulator -
  PUW52_RS08290 (PUW52_08290) - 1653207..1653617 (-) 411 WP_024052692.1 peptide deformylase -
  PUW52_RS08295 (PUW52_08295) scrK 1653685..1654584 (-) 900 WP_024052693.1 fructokinase ScrK -
  PUW52_RS08300 (PUW52_08300) - 1654860..1656758 (-) 1899 WP_024052694.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65095.79 Da        Isoelectric Point: 6.3384

>NTDB_id=789856 PUW52_RS08280 WP_274984302.1 1650833..1652599(-) (rcrP) [Streptococcus anginosus strain VSI16]
MVKLFKRLTVKEVGLIIISILFTCLAVYLDLEVPTYISKITELLQTKGTVVSDSWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNIIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGIRVVRAYNAEDYQDDKFAGANDEVTRLNLFVSRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALPGRLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLY
STIESPTEPKIAKDVKGEVVFDNVSFRYAKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGKILVD
GVNVKDYQLEDLHNKVGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWAALDLAQAKSFVEEKEDGLQSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKDTTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNAVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=789856 PUW52_RS08280 WP_274984302.1 1650833..1652599(-) (rcrP) [Streptococcus anginosus strain VSI16]
ATGGTTAAATTGTTTAAACGTTTAACTGTCAAAGAAGTAGGGCTGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTATTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGGAACGGTCGTTTCTGATT
CGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAACGATCTTACGCAAATTCAGCTCATGATTACCATGGGCTTGC
AAGTTGTGACGCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTGGCGGTTATTGTGAATATTATCATGACAACAGTTCTGATGACGTTGGCCTTTCCAAAGCAATCCGTTATTCA
ACGGTTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGATTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGAGCTAATGATGAAGTGACTCGTTTGAATCTCTTTGTCAGTCGTCTCATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTACCAGGACGTTTGCCAATCTTTAGTGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCCGGACGGATCAATGAAGTGCTTGATTTATAT
TCAACGATTGAGTCTCCAACGGAGCCAAAAATAGCGAAAGATGTCAAAGGGGAAGTGGTATTTGACAATGTGTCTTTCCG
CTATGCTAAAAATTCTGAGGCTGTTATCGAACATGTTAGCTTTACAGCTAAAGCAGGTGAAACCGTAGCTTTCATTGGAT
CAACCGGTTCTGGGAAATCCACTTTAATCAGCTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAAAATTTTAGTGGAT
GGCGTAAACGTCAAAGATTATCAGCTGGAAGATTTGCATAATAAAGTTGGCTACATTCCACAAAAAGCTGTCCTCTTCTC
TGGTGATATCAAGAGTAATTTAGACTTTGGGCAAAGCAATGAAAGCCCATTGGATGACGAAAAAATGTGGGCTGCACTTG
ATTTGGCACAGGCTAAATCATTTGTTGAAGAAAAAGAAGACGGTTTGCAATCTGAAGTTGCACAAAGCGGTACGAATTTC
TCTGGTGGGCAAAAGCAACGTTTGGCGATTGCGCGTGCGCTTGCTCGCAAGCCTGAAATTTTGATTTTTGATGATTCGTT
TTCAGCGCTGGACTATAAGACAGACCGCATTTTGCGGGAAGAATTAGCGAAAAAAGTGAAAGATACAACCAGATTGATTG
TGGCGCAACGGATTTCAACGATTATGGATGCCGATCAGATTTTGGTACTGGATAAAGGAAAAGTAGTTGGTCAGGGTACT
CATAAAGAATTGCTGGCAACGAACGCAGTTTATCAAGAAATTGCTTACTCACAATTATCGAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.667

100

0.721