Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   Q7646_RS06325 Genome accession   NZ_CP131638
Coordinates   1200997..1203846 (+) Length   949 a.a.
NCBI ID   WP_003690680.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2014E02-242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1195997..1208846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7646_RS06310 (Q7646_06360) - 1196247..1196837 (-) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -
  Q7646_RS06315 (Q7646_06365) znuD 1197248..1199524 (+) 2277 WP_014580101.1 TonB-dependent zinc receptor ZnuD -
  Q7646_RS06320 (Q7646_06370) - 1200064..1200843 (-) 780 WP_003690682.1 phosphatidylserine decarboxylase -
  Q7646_RS06325 (Q7646_06375) uvrA 1200997..1203846 (+) 2850 WP_003690680.1 excinuclease ABC subunit UvrA Machinery gene
  Q7646_RS06330 (Q7646_06380) - 1203864..1204505 (+) 642 WP_003689649.1 Eco29kI family restriction endonuclease -
  Q7646_RS06335 (Q7646_06385) dcm 1204509..1205642 (+) 1134 WP_003689650.1 DNA (cytosine-5-)-methyltransferase -
  Q7646_RS06340 (Q7646_06390) - 1205950..1206138 (+) 189 WP_014580099.1 transposase -
  Q7646_RS06345 (Q7646_06395) - 1206135..1206788 (-) 654 WP_341948147.1 IS1595 family transposase -
  Q7646_RS06350 (Q7646_06400) - 1206930..1208564 (-) 1635 WP_003689652.1 CTP synthase -

Sequence


Protein


Download         Length: 949 a.a.        Molecular weight: 105535.21 Da        Isoelectric Point: 7.0119

>NTDB_id=789834 Q7646_RS06325 WP_003690680.1 1200997..1203846(+) (uvrA) [Neisseria gonorrhoeae strain 2014E02-242]
MCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMD
KPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHKLPLSSQTVSQMVDAVLKLPEDTRVM
ILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGN
ERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWD
KRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLERRYRETDSE
TVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFFETLDLDGNKKQIAEKILKEITERLGFLI
NVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAI
READFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSERTPVNPDRMLVLKGARGNNLKNVTLELP
LGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIR
ELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLDMT
VEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLL
EVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEEVAKVKGSYTGKYLKVVLK

Nucleotide


Download         Length: 2850 bp        

>NTDB_id=789834 Q7646_RS06325 WP_003690680.1 1200997..1203846(+) (uvrA) [Neisseria gonorrhoeae strain 2014E02-242]
ATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTCGCGGCGCGCGCACGCATAATTTGAAAAA
CATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCGTTTG
ATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGATGGAC
AAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGCGTTC
CACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACGCCGTATTGCCCCGAAC
ACAAGCTGCCGCTATCCAGCCAAACCGTATCTCAAATGGTCGATGCCGTATTAAAACTGCCGGAAGATACGCGCGTGATG
ATTCTGGGGCCGGCGGTGCGCGAGCGTAAGGGCGAGTTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTGCCCG
TGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGACGTCG
TCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGGCAAC
GAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTATGCTCATA
CAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTGGGCA
ACACCAATTTCTTCGACCCCGAAAAAGTAGTCGCCCATCCCGAATTGTCGCTGGCAACCGGCGCGATTGACGGTTGGGAC
AAACGCAACCAATTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGGAAAC
TTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAACGCG
GCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAGCGAA
ACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAGAAGC
ACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTCGAAA
CGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTTGATT
AACGTCGGGCTGGATTACCTGAATTTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCCTCGC
CAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGACAACG
ACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGCCATC
CGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACACCCGA
AAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGCAAAAAATCCATTGCCGTGCCGTCTGAACGCA
CGCCCGTCAATCCCGACCGAATGCTCGTCCTCAAAGGTGCGCGCGGCAACAACCTCAAAAACGTCACCCTCGAGTTGCCG
CTCGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAATCAC
CGCCCGCGAACTCAACCGCGCCCAAGAAGAACCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAAGTCA
TCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTTACCCCCATCCGC
GAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCGGCCG
CTGCGAAGCCTGCCAAGGCGACGGCGTAATCAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAAGTCT
GCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACATGACG
GTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGTCTCGG
CTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTCTCCA
AACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCTGCTG
GAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCGCGGA
TTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAGGAAGTGGCGA
AGGTTAAGGGGAGTTATACCGGGAAGTATTTGAAAGTGGTTTTGAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.232

98.736

0.585

  uvrA Streptococcus pneumoniae TIGR4

59.232

98.736

0.585

  uvrA Streptococcus pneumoniae D39

59.232

98.736

0.585