Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   PUW71_RS09265 Genome accession   NZ_CP118053
Coordinates   1808534..1810963 (-) Length   809 a.a.
NCBI ID   WP_195916298.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803534..1815963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS09240 (PUW71_09240) - 1803817..1804635 (+) 819 WP_150888096.1 hypothetical protein -
  PUW71_RS09245 (PUW71_09245) - 1804653..1805924 (+) 1272 WP_150888094.1 toxic anion resistance protein -
  PUW71_RS09250 (PUW71_09250) hslO 1806145..1807017 (+) 873 WP_306789898.1 Hsp33 family molecular chaperone HslO -
  PUW71_RS09255 (PUW71_09255) dusB 1807004..1807975 (+) 972 WP_195916299.1 tRNA dihydrouridine synthase DusB -
  PUW71_RS09260 (PUW71_09260) - 1808047..1808491 (-) 445 Protein_1780 GNAT family N-acetyltransferase -
  PUW71_RS09265 (PUW71_09265) clpC 1808534..1810963 (-) 2430 WP_195916298.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  PUW71_RS09270 (PUW71_09270) - 1810967..1811428 (-) 462 WP_042754057.1 CtsR family transcriptional regulator -
  PUW71_RS09275 (PUW71_09275) - 1811688..1812038 (+) 351 WP_024052343.1 hypothetical protein -
  PUW71_RS09280 (PUW71_09280) tsf 1812125..1813168 (-) 1044 WP_195916297.1 translation elongation factor Ts -
  PUW71_RS09285 (PUW71_09285) rpsB 1813251..1814033 (-) 783 WP_195916296.1 30S ribosomal protein S2 -
  PUW71_RS09290 (PUW71_09290) comR/comR2 1814266..1814739 (-) 474 WP_024053280.1 sigma-70 family RNA polymerase sigma factor Regulator
  PUW71_RS09295 (PUW71_09295) rplQ 1815167..1815553 (-) 387 WP_003026513.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 89941.27 Da        Isoelectric Point: 6.4084

>NTDB_id=789627 PUW71_RS09265 WP_195916298.1 1808534..1810963(-) (clpC) [Streptococcus anginosus strain VSI40]
MKYSKALTESIESAQLLASHFETDYLESWHLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKIYQQEGSFTIWPF
SHRMKVLFLTAERIAEVVHAKNLGTEHVLLAMLFDRGSLAARLLEFTGFSYEDKEGVLRMTDLRKNLEHKASWGKEDIKA
IRHLNKNTAAAKQTMVNMMGLPPSTSGGLEDYTRDLTEMARAGLLEPVIGRDKEISRMLQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVAAGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEEHHKVVITDSAIGT
AVKYAHRYLTSKHLPDSAIDLLDEAAATVQNKGPQNHVKTELSAADEALMAGDWKKVGTLLEKESQPIVYKLKVKDEDIL
VTLSGLSGIPVQKLTQTDAKKYLHLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFMFLGPTGVGKTELAKA
LAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDARFDHESMEKRMMEELKKSYRPEFINRIDEKVVFHSLTSE
DMQEVVKIMVKPLIVSLAEKGIELKFQPSALKLLAQEGYDPEMGARPLRRTLQTQVEDHLSELLLAGELQMGQSLKVGVK
TGQLKFEVL

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=789627 PUW71_RS09265 WP_195916298.1 1808534..1810963(-) (clpC) [Streptococcus anginosus strain VSI40]
ATGAAATATTCAAAAGCTTTGACAGAAAGTATTGAGTCGGCACAACTGTTAGCGAGTCATTTTGAAACGGATTATTTGGA
GTCTTGGCATTTGTTGATTGCCATGGCGAATAATCCTTATAGTGTTGCGGGTTCAGTTTTAAATGATTATCCGCTTGAAA
TTGATGATTTTGAGAAAGCAGCCTTTCATATCACAGGAAAGATTTATCAACAAGAGGGAAGCTTTACCATTTGGCCGTTT
TCTCATCGTATGAAAGTGTTGTTTTTGACAGCTGAGCGAATTGCAGAGGTTGTGCATGCTAAGAATCTTGGGACAGAGCA
TGTGTTGTTAGCTATGCTGTTTGACCGAGGAAGTTTGGCGGCACGTCTCCTTGAATTTACAGGCTTTAGCTATGAGGATA
AAGAAGGCGTTTTGCGTATGACCGATCTTCGGAAAAACTTAGAGCATAAGGCTAGCTGGGGTAAAGAAGATATAAAGGCT
ATTCGCCACTTAAATAAAAATACTGCTGCAGCGAAACAAACGATGGTCAATATGATGGGGCTGCCTCCTTCTACCAGTGG
TGGACTAGAAGATTATACCCGTGATTTAACCGAAATGGCTCGTGCTGGTCTTTTAGAACCGGTCATTGGGCGGGATAAAG
AGATTTCTCGCATGCTTCAGATTTTAAGTCGCAAGACGAAAAATAATCCAGTGTTGGTAGGAGATGCAGGAGTTGGGAAG
ACAGCATTAGCCCTTGGTTTGGCGCAACGTGTGGCAGCTGGTCAAGTTCCAAATGAGCTTGCAAAGATGAGAGTTCTGGA
GCTGGATTTGATGAATGTGGTAGCTGGGACTCGTTTTCGCGGTGATTTTGAAGAGCGGATGAACAATATTATCAATGATA
TTGAAGCAGACGGGCATGTGATTCTCTTTATTGATGAGCTTCATACTATTATGGGTTCTGGCAGTGGGATTGATTCGACA
TTAGATGCAGCGAACATTCTCAAGCCAGCTTTGGCTAGAGGAACACTTAGAACGGTCGGCGCAACGACACAAGAAGAGTA
CCAGAAATATATTGAAAAAGATGCGGCTCTTTCACGGCGATTTGCCAAGGTTACTATTGAAGAGCCTACGGTAGCTGATA
GTATTGCGATTTTACAGGGGCTCAAGAAAAGCTATGAAGAACACCACAAAGTGGTGATTACAGATTCAGCGATTGGGACA
GCTGTTAAGTATGCTCATCGTTATCTAACAAGTAAACATCTACCTGACTCGGCGATCGATTTGCTAGATGAAGCTGCCGC
AACGGTACAAAATAAAGGTCCGCAAAATCATGTAAAAACAGAATTGAGTGCAGCAGACGAGGCTTTAATGGCAGGCGATT
GGAAAAAGGTTGGCACTTTGTTGGAGAAAGAAAGTCAGCCAATTGTCTACAAACTAAAGGTTAAAGACGAGGATATTTTG
GTAACACTCAGCGGTTTATCGGGAATTCCTGTGCAAAAGTTGACGCAAACAGATGCGAAGAAATACCTCCATTTAGAAAA
GGAACTGCACAAACGGGTCATTGGGCAAAATGAAGCAATTTCTGCTATCAGTCGAGCGATTCGGCGCAATCAATCCGGCA
TCCGCACCAGCAAACGTCCAATTGGCTCCTTTATGTTCTTGGGTCCAACTGGGGTTGGAAAAACTGAGCTGGCTAAGGCT
TTGGCGGAAGTTCTCTTTGATGATGAAACAGCACTCATTCGTTTTGATATGAGTGAATATATGGAGAAATTTGCTGCCAG
TCGACTTAATGGAGCGCCTCCAGGTTATGTCGGTTATGAAGAAGGGGGCGAATTAACTGAAAAAGTTCGCAATCGTCCGT
ACTCTGTACTCCTCTTTGATGAGGTAGAAAAAGCACATCCTGATATTTTCAATGTGCTTCTACAAGTCTTAGATGACGGG
GTGCTGACCGACAGTAAGGGACGCAAGGTGGATTTTTCCAATACCATTATCATTATGACTAGCAATCTTGGTGCGACAAG
TTTGCGGGATGATAAGACGGTCGGTTTTGGAGCGCGTGATGCTCGCTTTGATCATGAAAGCATGGAAAAACGGATGATGG
AAGAACTCAAGAAAAGTTATCGTCCGGAATTTATCAATCGGATTGATGAAAAGGTTGTTTTCCATAGCCTGACTAGCGAA
GACATGCAAGAAGTGGTAAAAATTATGGTGAAGCCACTCATTGTCAGTCTCGCTGAAAAAGGAATTGAACTGAAATTCCA
ACCTAGTGCTTTGAAACTTCTGGCTCAAGAGGGTTATGACCCTGAAATGGGAGCTCGTCCACTGCGCAGAACTCTACAAA
CTCAGGTAGAAGATCATTTATCCGAATTACTTTTAGCTGGTGAGTTACAGATGGGACAAAGTTTGAAAGTCGGTGTCAAA
ACTGGACAGCTGAAGTTTGAAGTGCTCTGA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(539-710)

AAA lid domain (AAA_lid_9)

(371-439)

ATPase family associated with various cellular activities (AAA) (AAA)

(231-347)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(717-797)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(14-60)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(102-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus pneumoniae TIGR4

77.559

100

0.778
  clpC Streptococcus pneumoniae Rx1

77.559

100

0.778
  clpC Streptococcus pneumoniae D39

77.559

100

0.778
  clpC Streptococcus mutans UA159

67.117

100

0.676
  clpC Streptococcus thermophilus LMG 18311

66.093

100

0.665
  clpC Streptococcus thermophilus LMD-9

65.971

100

0.664
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

49.88

100

0.512
  clpC Bacillus subtilis subsp. subtilis str. 168

45.205

99.258

0.449
  clpE Streptococcus pneumoniae TIGR4

46.965

77.379

0.363
  clpE Streptococcus pneumoniae Rx1

46.805

77.379

0.362
  clpE Streptococcus pneumoniae D39

46.805

77.379

0.362
  clpE Streptococcus pneumoniae R6

46.805

77.379

0.362
  clpE Streptococcus mutans UA159

47.021

76.761

0.361