Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PUW71_RS02960 Genome accession   NZ_CP118053
Coordinates   571910..573712 (+) Length   600 a.a.
NCBI ID   WP_070241593.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 566910..578712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS02940 (PUW71_02940) - 568206..568523 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  PUW71_RS02945 (PUW71_02945) - 568546..569052 (+) 507 WP_024051956.1 hypothetical protein -
  PUW71_RS02950 (PUW71_02950) celB 569092..570435 (+) 1344 WP_024051955.1 PTS cellobiose transporter subunit IIC -
  PUW71_RS02955 (PUW71_02955) coiA 570927..571958 (+) 1032 WP_024051954.1 competence protein CoiA family protein Machinery gene
  PUW71_RS02960 (PUW71_02960) pepF 571910..573712 (+) 1803 WP_070241593.1 oligoendopeptidase F Regulator
  PUW71_RS02965 (PUW71_02965) - 573714..574397 (+) 684 WP_024051952.1 O-methyltransferase -
  PUW71_RS02970 (PUW71_02970) prsA 574504..575443 (+) 940 Protein_545 peptidylprolyl isomerase PrsA -
  PUW71_RS02975 (PUW71_02975) - 575581..576150 (+) 570 WP_081333904.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69296.26 Da        Isoelectric Point: 4.5220

>NTDB_id=789600 PUW71_RS02960 WP_070241593.1 571910..573712(+) (pepF) [Streptococcus anginosus strain VSI40]
MAKQRNEIEEKYTWDLTTIFTTDEAFEAELTQVSKELKEASSLAGHLLDSSDSLLKTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQAFAFYEPEFMAITDEQYQTFLAEKPELQIYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGETFGILDNADIVFPTVHDEEGNEVQLTHGNYISLVESKNRTVRKETYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRNFSSAREAALSANFIPESVYDSLVSAVNKHLPLLHRYIALRAKILGLSDLKMYDLYTPLSEADYKFTYEEALM
KAEEVLAILGEDYLGRVKEAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALADKIVNGTQEDKEKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=789600 PUW71_RS02960 WP_070241593.1 571910..573712(+) (pepF) [Streptococcus anginosus strain VSI40]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAACAACGATTTTCACAACAGATGAAGCTTTTGA
GGCAGAGTTAACTCAAGTTTCAAAAGAATTAAAAGAAGCCAGCAGCTTAGCAGGGCATCTTTTGGACTCATCTGACAGCC
TTTTAAAAACAACAGAAATCCAATTGGACTTGATGCGTCGTATCGAAAAACTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGCGTGGCAAAATATCAAGAATACCAAGCCAAAGGAATGGCCATTTATAGTGAGTTCGGACAGGCCTTTGC
TTTTTATGAGCCAGAATTTATGGCAATCACAGACGAGCAATATCAGACTTTCTTAGCTGAAAAGCCCGAATTGCAAATCT
ATCAGCATTTCTTTGATAAGCTACTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTAGCAGGAGCT
GGTGAAATTTTTAGTGCTGCGGGTGAAACTTTTGGAATCTTAGATAATGCTGATATTGTCTTTCCAACCGTGCACGACGA
AGAAGGAAATGAAGTGCAATTGACGCACGGAAATTACATTAGTTTAGTGGAGTCGAAAAATCGTACAGTCCGCAAGGAAA
CTTATGAAGCGCTTTACAGCGTCTATGAGCAATACCAACATACTTATGCTAAGACACTCCAAACGAATGTTAAAGTTCAT
AATTACAATGCCAAAGTTCGTAATTTTTCTTCTGCGCGTGAAGCTGCTTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGATAGCTTAGTGTCTGCGGTCAACAAACACTTGCCACTCTTACATCGCTACATCGCCCTACGTGCAAAGATTTTAGGCC
TTTCTGATTTGAAAATGTATGACCTCTATACACCATTGTCAGAAGCAGATTACAAATTTACTTATGAGGAAGCCTTGATG
AAAGCAGAAGAAGTCTTAGCTATCCTTGGAGAAGATTATCTAGGTCGAGTAAAAGAAGCCTTTTCAGATCGTTGGATTGA
TGTTTATGAAAACCAAGGTAAGCGCTCTGGGGCTTATTCTGGTGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACGTTGGACAATCTTTTCACGCTGGTTCATGAAACAGGTCACAGTATGCATTCTAGCTATACTCGTGAAAAT
CAGCCATACGTTTACGGAGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACGACCAATGAAAATATCCTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACCCGCTTTGCGATTCTGAATCATTTCTTGGACGGTTTCCGTGGAACTGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACATGCCATTCACAAAGCTGACCAAGAAGGTCAAGTCTTGACGAGTGAATTT
TTGAATGATTTGTACGCAGATTTGAATGAAAAATATTATGGTTTGACGAAAGAAGACAACCCACAAATTCAATACGAATG
GGCACGGATTCCGCATTTCTACTATGATTACTATGTTTTTCAATACTCAACCGGTTTCTCAGCTGCTTCTGCCTTAGCAG
ATAAGATTGTTAACGGAACGCAAGAAGATAAAGAGAAGTATCTCAACTACTTGAAAGCAGGAAATTCTGATTATCCGCTA
AATGTCATTAAAAAAGCTGGTGTAGATATGGAAAAAGAAGACTACCTCAATGCTGCTTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTCGTAGAAAAGTTAGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682