Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7650_RS09450 Genome accession   NZ_CP131626
Coordinates   1796962..1797105 (+) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020S05-258     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1791962..1802105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7650_RS09405 (Q7650_09475) - 1792314..1792670 (+) 357 Protein_1830 pilin -
  Q7650_RS09410 (Q7650_09480) - 1792721..1793008 (+) 288 Protein_1831 pilin -
  Q7650_RS09415 (Q7650_09485) - 1793065..1793283 (+) 219 Protein_1832 pilin -
  Q7650_RS09420 (Q7650_09490) - 1793373..1793715 (+) 343 Protein_1833 pilin -
  Q7650_RS09425 (Q7650_09495) - 1793768..1794109 (+) 342 Protein_1834 pilin -
  Q7650_RS09430 (Q7650_09500) - 1794149..1794508 (+) 360 Protein_1835 pilin -
  Q7650_RS09435 (Q7650_09510) lpxC 1794963..1795886 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q7650_RS09440 (Q7650_09515) - 1796014..1796418 (+) 405 Protein_1837 pilin -
  Q7650_RS09445 (Q7650_09520) - 1796541..1796659 (+) 119 Protein_1838 pilin -
  Q7650_RS09450 (Q7650_09525) pilE 1796962..1797105 (+) 144 WP_012503975.1 hypothetical protein Machinery gene
  Q7650_RS09455 (Q7650_09530) - 1797474..1797991 (+) 518 Protein_1840 pilin -
  Q7650_RS09460 (Q7650_09535) - 1798537..1799337 (+) 801 WP_341979042.1 opacity family porin -
  Q7650_RS09465 (Q7650_09540) - 1799351..1799500 (+) 150 WP_162894439.1 hypothetical protein -
  Q7650_RS09470 (Q7650_09545) pilA 1799603..1800856 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=789567 Q7650_RS09450 WP_012503975.1 1796962..1797105(+) (pilE) [Neisseria gonorrhoeae strain 2020S05-258]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=789567 Q7650_RS09450 WP_012503975.1 1796962..1797105(+) (pilE) [Neisseria gonorrhoeae strain 2020S05-258]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447