Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PUW46_RS09695 Genome accession   NZ_CP118044
Coordinates   1982339..1983055 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain VSI56     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977339..1988055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW46_RS09665 (PUW46_09665) - 1977555..1978181 (+) 627 WP_000522384.1 nitroreductase family protein -
  PUW46_RS09670 (PUW46_09670) - 1978542..1979327 (+) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  PUW46_RS09675 (PUW46_09675) - 1979927..1980061 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  PUW46_RS09680 (PUW46_09680) agrB 1980297..1980866 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  PUW46_RS09685 (PUW46_09685) - 1980863..1981003 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  PUW46_RS09690 (PUW46_09690) - 1981028..1982320 (+) 1293 WP_275008437.1 GHKL domain-containing protein -
  PUW46_RS09695 (PUW46_09695) agrA 1982339..1983055 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  PUW46_RS09700 (PUW46_09700) - 1983127..1983236 (+) 110 Protein_1870 hypothetical protein -
  PUW46_RS09705 (PUW46_09705) - 1983424..1984383 (-) 960 WP_001253305.1 carbohydrate kinase -
  PUW46_RS09710 (PUW46_09710) - 1984380..1985864 (-) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  PUW46_RS09715 (PUW46_09715) - 1986013..1986963 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=789431 PUW46_RS09695 WP_000688492.1 1982339..1983055(+) (agrA) [Staphylococcus aureus strain VSI56]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=789431 PUW46_RS09695 WP_000688492.1 1982339..1983055(+) (agrA) [Staphylococcus aureus strain VSI56]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1