Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PT671_RS16730 Genome accession   NZ_CP118021
Coordinates   3367059..3367805 (+) Length   248 a.a.
NCBI ID   WP_003222598.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362059..3372805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS16715 - 3362286..3362477 (-) 192 WP_003222590.1 hypothetical protein -
  PT671_RS16720 valS 3362927..3365569 (+) 2643 WP_003222594.1 valine--tRNA ligase -
  PT671_RS16725 - 3365630..3366922 (+) 1293 WP_003222596.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PT671_RS16730 comC 3367059..3367805 (+) 747 WP_003222598.1 prepilin peptidase Machinery gene
  PT671_RS16735 - 3367939..3368937 (+) 999 WP_003222600.1 SPOR domain-containing protein -
  PT671_RS16740 - 3369089..3369658 (+) 570 WP_003222602.1 Maf family nucleotide pyrophosphatase -
  PT671_RS16745 radC 3369695..3370390 (+) 696 WP_003222604.1 RadC family protein -
  PT671_RS16750 mreB 3370482..3371495 (+) 1014 WP_003222607.1 cell shape-determining protein MreB -
  PT671_RS16755 mreC 3371526..3372398 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26645.26 Da        Isoelectric Point: 9.6309

>NTDB_id=789175 PT671_RS16730 WP_003222598.1 3367059..3367805(+) (comC) [Bacillus spizizenii strain B-354]
MLLILFLLGLILGSFYYTAGCRIPVHISIITPRSACSFCRRTLTAAELIPILSFLFQRGKCKSCGHRISFMYPAAELVTA
CLFAAAEIRFGSSPELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=789175 PT671_RS16730 WP_003222598.1 3367059..3367805(+) (comC) [Bacillus spizizenii strain B-354]
ATGCTTCTCATTCTTTTTCTCCTCGGGCTGATTCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCGTACATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGTCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAGGGGCAAATGTAAAAGCTGCGGACATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGAAATACGCTTTGGCTCATCTCCGGAACTATTTCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATCTTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGTCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGACCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTGTTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAACTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.532

100

0.915