Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PT671_RS09795 Genome accession   NZ_CP118021
Coordinates   1990961..1992073 (-) Length   370 a.a.
NCBI ID   WP_003219265.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985961..1997073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS09780 gyrA 1986040..1988505 (-) 2466 WP_003219268.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  PT671_RS09785 gyrB 1988722..1990638 (-) 1917 WP_003219267.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PT671_RS09790 remB 1990693..1990938 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  PT671_RS09795 recF 1990961..1992073 (-) 1113 WP_003219265.1 DNA replication/repair protein RecF Machinery gene
  PT671_RS09800 rlbA 1992089..1992304 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  PT671_RS09805 dnaN 1992436..1993572 (-) 1137 WP_003219263.1 DNA polymerase III subunit beta -
  PT671_RS09810 dnaA 1993760..1995100 (-) 1341 WP_003219262.1 chromosomal replication initiator protein DnaA -
  PT671_RS09815 rpmH 1995720..1995854 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  PT671_RS09820 rnpA 1996006..1996356 (+) 351 WP_003219260.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42347.41 Da        Isoelectric Point: 7.7139

>NTDB_id=789153 PT671_RS09795 WP_003219265.1 1990961..1992073(-) (recF) [Bacillus spizizenii strain B-354]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPKDLSKI
GDSYQEAFSKLREKEIERGITLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=789153 PT671_RS09795 WP_003219265.1 1990961..1992073(-) (recF) [Bacillus spizizenii strain B-354]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAATCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACAGGA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATTCCCATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGCATGACCTTTCTCTTTACCAGAAAATCCTCTCGCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTAACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCGCAGCTCGAAAAATGGGCTCAGCCTATCCATGCGGGCA
TCTCAAGAGGGCTTGAAGAGCTGACCCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTAAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTATTACGCTGTCAGGGCCTCACCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACCACGGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATACCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992