Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PT671_RS09570 Genome accession   NZ_CP118021
Coordinates   1950282..1950566 (+) Length   94 a.a.
NCBI ID   WP_003218316.1    Uniprot ID   G4NTA5
Organism   Bacillus spizizenii strain B-354     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945282..1955566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS09555 - 1945472..1946695 (-) 1224 WP_003218322.1 ubiquitin-like domain-containing protein -
  PT671_RS09560 - 1946941..1947708 (-) 768 WP_003218320.1 TatD family hydrolase -
  PT671_RS09565 metG 1947787..1949781 (-) 1995 WP_003218318.1 methionine--tRNA ligase -
  PT671_RS09570 abrB 1950282..1950566 (+) 285 WP_003218316.1 transition state genes transcriptional regulator AbrB Regulator
  PT671_RS09575 rsmI 1950615..1951493 (-) 879 WP_032727259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PT671_RS09580 - 1951468..1951767 (-) 300 WP_003218311.1 GIY-YIG nuclease family protein -
  PT671_RS09585 - 1951754..1952497 (-) 744 WP_003218310.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PT671_RS09590 yabA 1952556..1952915 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  PT671_RS09595 ricT 1952930..1953757 (-) 828 WP_003218300.1 competence/sporulation regulator complex protein RicT -
  PT671_RS09600 holB 1953760..1954749 (-) 990 WP_003218299.1 DNA polymerase III subunit delta' -
  PT671_RS09605 - 1954761..1955201 (-) 441 WP_003218297.1 YaaR family protein -
  PT671_RS09610 darA 1955214..1955543 (-) 330 WP_003218295.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10494.25 Da        Isoelectric Point: 6.3482

>NTDB_id=789151 PT671_RS09570 WP_003218316.1 1950282..1950566(+) (abrB) [Bacillus spizizenii strain B-354]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNLK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=789151 PT671_RS09570 WP_003218316.1 1950282..1950566(+) (abrB) [Bacillus spizizenii strain B-354]
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAGCTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGACGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NTA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1