Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PT671_RS05315 Genome accession   NZ_CP118021
Coordinates   1097427..1098218 (-) Length   263 a.a.
NCBI ID   WP_003223233.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092427..1103218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS05280 - 1093260..1094120 (-) 861 WP_003223248.1 alpha/beta fold hydrolase -
  PT671_RS05285 - 1094107..1094439 (-) 333 WP_032727352.1 SdpI family protein -
  PT671_RS05290 - 1094525..1095043 (-) 519 WP_003223245.1 SH3 domain-containing protein -
  PT671_RS05295 - 1095187..1095456 (-) 270 WP_003223243.1 YfhJ family protein -
  PT671_RS05300 - 1095581..1095733 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  PT671_RS05305 - 1095767..1096960 (-) 1194 WP_003223237.1 MFS transporter -
  PT671_RS05310 - 1097098..1097418 (-) 321 WP_003223235.1 YfhH family protein -
  PT671_RS05315 recX 1097427..1098218 (-) 792 WP_003223233.1 recombination regulator RecX Regulator
  PT671_RS05320 - 1098307..1099218 (+) 912 WP_003223231.1 TIGR01777 family oxidoreductase -
  PT671_RS05325 - 1099273..1099383 (+) 111 WP_003223230.1 YfhE family protein -
  PT671_RS05330 - 1099450..1099641 (+) 192 WP_003223225.1 YfhD family protein -
  PT671_RS05335 - 1099680..1100264 (-) 585 WP_003223222.1 nitroreductase family protein -
  PT671_RS05340 - 1100351..1101158 (-) 808 Protein_1047 PhzF family phenazine biosynthesis isomerase -
  PT671_RS05345 - 1101272..1102303 (-) 1032 WP_003223220.1 FecCD family ABC transporter permease -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30884.16 Da        Isoelectric Point: 6.6695

>NTDB_id=789141 PT671_RS05315 WP_003223233.1 1097427..1098218(-) (recX) [Bacillus spizizenii strain B-354]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALEFLSYRMRSTKEV
EDHLKKKEISAPVIAEVIHKLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQMQLQRKGFSFDVISAALEQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=789141 PT671_RS05315 WP_003223233.1 1097427..1098218(-) (recX) [Bacillus spizizenii strain B-354]
ATGCCATTTATTACAAAAATATCAACGCAAAAGAAGAATACGGAACGCTTCAATATCTTTCTCGATGAAAAATACGCCTT
CAGTGTGGACGCGGACGTGCTCGTGAAATTTGAGCTCAAAAAGGGAAAAGAACTTGATGACCTTGACATCATTGAGATTC
AATACGGCGATGAAGTAAAGAAAGGCTTCAACCGTGCGCTTGAATTTTTATCCTACCGGATGAGGTCAACGAAAGAGGTT
GAGGACCACTTAAAGAAAAAAGAAATTTCGGCGCCCGTCATTGCGGAAGTCATCCATAAGCTGAACGACTACAAGTACTT
AAACGACCAGGAATTTGCCGCGGCCTATGTCAGCACCCACAAAAAAACGAACGGAAAAGGCCCTGACGTTTTGTTCAGAG
AGCTGAGAGCAAAGGGAATCGACGACGATACAATTAAGGAGGCGCTGAGTTCCTTTTCCTTTGAAGATCAGACGAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAGGATAAAAAACTTTCAACAAAAGAACTCAAACAGCGCGCCCAGATGCA
GCTACAGCGCAAGGGCTTCTCATTTGATGTCATCAGCGCGGCACTGGAGCAGATTGAATATGAAAATGATGAAGACACAG
AAAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

96.578

100

0.966