Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PT671_RS04240 Genome accession   NZ_CP118021
Coordinates   904155..904733 (-) Length   192 a.a.
NCBI ID   WP_003224368.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 899155..909733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS04210 - 899654..900277 (-) 624 WP_032727224.1 TVP38/TMEM64 family protein -
  PT671_RS04215 - 900430..900792 (+) 363 WP_003224380.1 hypothetical protein -
  PT671_RS04220 - 901018..901218 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PT671_RS04225 - 901215..902684 (+) 1470 WP_003224375.1 sodium:solute symporter family protein -
  PT671_RS04230 - 902727..902996 (-) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  PT671_RS04235 - 903213..904112 (+) 900 WP_003224369.1 SDR family oxidoreductase -
  PT671_RS04240 comK 904155..904733 (-) 579 WP_003224368.1 competence transcription factor ComK Regulator
  PT671_RS04245 - 905026..905259 (+) 234 WP_003224366.1 IDEAL domain-containing protein -
  PT671_RS04250 - 905287..906144 (-) 858 WP_003224364.1 SDR family oxidoreductase -
  PT671_RS04255 - 906256..907785 (+) 1530 WP_003224362.1 FAD-dependent oxidoreductase -
  PT671_RS21460 hemAT 908039..908416 (+) 378 Protein_850 heme-based aerotactic transducer HemAT -
  PT671_RS21465 - 908423..909220 (+) 798 WP_373690383.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22511.83 Da        Isoelectric Point: 8.1154

>NTDB_id=789136 PT671_RS04240 WP_003224368.1 904155..904733(-) (comK) [Bacillus spizizenii strain B-354]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVRMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=789136 PT671_RS04240 WP_003224368.1 904155..904733(-) (comK) [Bacillus spizizenii strain B-354]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGGATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGTTGC
CGATCTCCTATAATTCGTTCGAGAATCAGGTATACCGGACAGCATGGCTAAGAACTAAATTCCAAGATAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGTACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.438

100

0.984