Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PT671_RS03810 Genome accession   NZ_CP118021
Coordinates   817928..818881 (-) Length   317 a.a.
NCBI ID   WP_003224557.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 812928..823881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS03780 appD 813057..814043 (-) 987 WP_003224568.1 oligopeptide ABC transporter ATP-binding protein AppD -
  PT671_RS03785 - 814234..815019 (-) 786 WP_003224566.1 DUF2268 domain-containing protein -
  PT671_RS03790 fabF 815095..816336 (-) 1242 WP_003224564.1 beta-ketoacyl-ACP synthase II -
  PT671_RS03795 fabH 816361..817299 (-) 939 WP_003224562.1 beta-ketoacyl-ACP synthase III -
  PT671_RS03800 - 817465..817692 (+) 228 WP_072183380.1 hypothetical protein -
  PT671_RS03805 comZ 817722..817913 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  PT671_RS03810 med 817928..818881 (-) 954 WP_003224557.1 transcriptional regulator Med Regulator
  PT671_RS03815 - 818972..819529 (-) 558 WP_003224555.1 hypothetical protein -
  PT671_RS03820 - 819613..820347 (-) 735 WP_003224553.1 hypothetical protein -
  PT671_RS03825 - 820598..820783 (+) 186 WP_003224551.1 YjzD family protein -
  PT671_RS03830 - 820829..821008 (-) 180 WP_003224549.1 YjzC family protein -
  PT671_RS03835 argF 821109..822053 (-) 945 WP_003224547.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35322.88 Da        Isoelectric Point: 4.6608

>NTDB_id=789133 PT671_RS03810 WP_003224557.1 817928..818881(-) (med) [Bacillus spizizenii strain B-354]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHLSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=789133 PT671_RS03810 WP_003224557.1 817928..818881(-) (med) [Bacillus spizizenii strain B-354]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGTTGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGATGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATTATAAATGCAATTGAGGAT
TTTCATAAGCGGGGTGTTAATCTTCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACAAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGTTACGTCACAGATCAATCGGACCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCTTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAAAACGGGGGTTGTTGAAATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

98.423

100

0.984