Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PT671_RS03685 Genome accession   NZ_CP118021
Coordinates   794487..795608 (-) Length   373 a.a.
NCBI ID   WP_229283711.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 789487..800608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS03660 - 789623..790360 (+) 738 WP_003224614.1 lytic transglycosylase domain-containing protein -
  PT671_RS03665 - 790615..791013 (+) 399 WP_003224612.1 group 2 truncated hemoglobin YjbI -
  PT671_RS03670 spxH 791010..791909 (+) 900 WP_003224611.1 protease adaptor protein SpxH -
  PT671_RS03675 - 792223..792390 (+) 168 WP_019713977.1 hypothetical protein -
  PT671_RS03680 pepF 792428..794257 (-) 1830 WP_171017002.1 oligoendopeptidase F -
  PT671_RS03685 coiA 794487..795608 (-) 1122 WP_229283711.1 competence protein CoiA family protein Machinery gene
  PT671_RS03690 - 795682..795803 (+) 122 Protein_736 hypothetical protein -
  PT671_RS03695 mecA 795798..796454 (-) 657 WP_003224603.1 adaptor protein MecA Regulator
  PT671_RS03700 - 796421..796546 (-) 126 WP_120698858.1 hypothetical protein -
  PT671_RS03705 - 796730..797386 (+) 657 WP_003224601.1 TerC family protein -
  PT671_RS03710 spx 797429..797824 (-) 396 WP_003224599.1 transcriptional regulator Spx -
  PT671_RS03715 - 798005..798583 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  PT671_RS03720 - 798761..799975 (-) 1215 WP_079996334.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43511.59 Da        Isoelectric Point: 10.2265

>NTDB_id=789128 PT671_RS03685 WP_229283711.1 794487..795608(-) (coiA) [Bacillus spizizenii strain B-354]
MFHLLGARQSRKLKGRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQQASPILEP
YIKNINQRPDIMAKIKGRMLAVEYQCATLAPDVFQKRTEGFKQAGIIPQWIVGRSRLKRSAPSFYQLSAFHWQFINASSY
RELICYCPETRSFRRLSHIIPFYTNHSYSSVQTIPIHRAAANDLFFTEPTPAFQYSGWTKAIHRFRHKPHRFISKETNRL
RLLFYEKRQTPLSFLPTEVFVPVIKGAVFNSPVFVWQGFLYLFITDLGYKRAPIRFSAVLQQCKLHIHKKNISLRYKCSE
DCLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAEGVRSLQDLIESDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=789128 PT671_RS03685 WP_229283711.1 794487..795608(-) (coiA) [Bacillus spizizenii strain B-354]
ATATTTCACCTTCTAGGCGCTCGGCAAAGCCGGAAATTAAAGGGAAGACGATTCTTCTGCCCGGTGTGCGGAGGTGAGCT
TGCTGTGAAGCTCGGTCTCCAAAAAGCACCGCATTTCGCCCATAAACAGAACAAATCCTGTTCGATAGACATAGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAGAGACAACTGTATGTATGGCTGAAAACGCAACAGGCTTCCCCGATATTAGAACCG
TATATCAAAAACATCAATCAAAGACCGGACATCATGGCAAAGATCAAGGGGCGCATGCTTGCTGTTGAGTATCAATGTGC
CACTCTTGCTCCAGATGTCTTTCAAAAACGGACAGAGGGCTTCAAACAAGCAGGAATCATCCCGCAGTGGATTGTGGGAC
GCAGCCGCTTAAAACGCTCTGCTCCATCCTTTTATCAGCTTTCTGCTTTCCATTGGCAGTTTATCAATGCAAGTTCATAC
AGGGAACTGATATGTTATTGCCCGGAAACACGTTCTTTCCGCCGGCTCAGCCACATCATTCCGTTTTACACAAACCATTC
TTATTCCTCTGTTCAAACGATCCCTATCCATCGGGCTGCTGCAAACGATCTTTTTTTTACTGAACCGACGCCCGCATTTC
AATATTCTGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGATTTATCTCCAAGGAAACAAATCGCCTC
AGGCTGCTGTTTTATGAAAAGCGGCAGACGCCCCTTTCTTTTCTTCCGACGGAAGTGTTTGTCCCTGTTATAAAAGGGGC
TGTTTTTAATAGCCCGGTTTTTGTGTGGCAGGGGTTTCTATATCTGTTTATTACGGATCTGGGATATAAACGTGCGCCAA
TTCGCTTTTCAGCCGTTTTACAGCAGTGCAAACTGCACATTCATAAAAAGAACATTTCGCTCAGATACAAATGCAGCGAA
GATTGTCTTTCTGAAGCGGTGAAACAGTACATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGAGGGCGTACGCTCATTACAGGATCTCATAGAAAGTGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

88.472

100

0.885