Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PT671_RS02250 Genome accession   NZ_CP118021
Coordinates   536482..537069 (-) Length   195 a.a.
NCBI ID   WP_003218692.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 531482..542069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS02225 mobB 531880..532401 (-) 522 WP_003218703.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  PT671_RS02230 glp 532362..533654 (-) 1293 WP_003218701.1 gephyrin-like molybdotransferase Glp -
  PT671_RS02235 - 533672..534691 (-) 1020 WP_003218699.1 MoeB/ThiF family adenylyltransferase -
  PT671_RS02240 - 534742..535341 (-) 600 WP_003218697.1 molybdenum cofactor guanylyltransferase -
  PT671_RS02245 cse15 535477..536442 (+) 966 WP_003218694.1 spore protein Cse15 -
  PT671_RS02250 rok 536482..537069 (-) 588 WP_003218692.1 transcriptional regulator Rok Regulator
  PT671_RS02255 ykuV 537517..537975 (-) 459 WP_003218690.1 thiol-disulfide oxidoreductase YkuV -
  PT671_RS02260 ahpA 538045..538587 (-) 543 WP_003218688.1 biofilm-specific peroxidase AhpA -
  PT671_RS02265 mscT 538832..539635 (+) 804 WP_003218686.1 small-conductance mechanosensitive channel protein MscT -
  PT671_RS02270 - 539671..539916 (-) 246 WP_003218684.1 YkuS family protein -
  PT671_RS02275 - 539978..541102 (-) 1125 WP_003218682.1 N-acetyldiaminopimelate deacetylase -
  PT671_RS02280 dapD 541172..541882 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22244.23 Da        Isoelectric Point: 9.7036

>NTDB_id=789123 PT671_RS02250 WP_003218692.1 536482..537069(-) (rok) [Bacillus spizizenii strain B-354]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEIESTESAESANE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=789123 PT671_RS02250 WP_003218692.1 536482..537069(-) (rok) [Bacillus spizizenii strain B-354]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCCGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAG
AAGAAGAGGGACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAACG
CGGCGATTAAGAGTTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATG
CAAAGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCAAC
TGAATCTGCAGAATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

97.949

100

0.979