Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PT671_RS02125 Genome accession   NZ_CP118021
Coordinates   511408..511686 (-) Length   92 a.a.
NCBI ID   WP_003222317.1    Uniprot ID   A0A9Q4H8P7
Organism   Bacillus spizizenii strain B-354     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 506408..516686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS02105 ade 506457..508190 (-) 1734 WP_003222307.1 adenine deaminase -
  PT671_RS02110 ktrC 508348..509013 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PT671_RS02115 - 509085..509912 (-) 828 WP_003222313.1 gamma-glutamylcyclotransferase -
  PT671_RS02120 kinC 509929..511215 (-) 1287 WP_003222315.1 two-component sensor histidine kinase KinC -
  PT671_RS02125 abrB 511408..511686 (-) 279 WP_003222317.1 transcriptional regulator AbhA Regulator
  PT671_RS02130 mreBH 511967..512974 (+) 1008 WP_003222320.1 cell shape-determining protein MreBH -
  PT671_RS02135 - 513076..513210 (+) 135 WP_003222322.1 protein YkpC -
  PT671_RS02140 - 513320..514552 (+) 1233 WP_003222324.1 aminopeptidase -
  PT671_RS02145 - 514583..515494 (-) 912 WP_003222326.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10290.08 Da        Isoelectric Point: 5.8808

>NTDB_id=789122 PT671_RS02125 WP_003222317.1 511408..511686(-) (abrB) [Bacillus spizizenii strain B-354]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCFMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=789122 PT671_RS02125 WP_003222317.1 511408..511686(-) (abrB) [Bacillus spizizenii strain B-354]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGTATTGTCATGCCGATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCCTGAAAAAGTACAAACCTCATGGCGTCT
GTTTTATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576