Detailed information NTG0789036

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PUT72_RS12615
• Genome accession: NZ_CP117994
• Coordinates: 2694805..2695791 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain 20220413_2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2689805..2700791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUT72_RS12600 (PUT72_12600)	recA	2690350..2691393 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
PUT72_RS12605 (PUT72_12605)	pncC	2691594..2692076 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
PUT72_RS12610 (PUT72_12610)	mutS	2692161..2694722 (+)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
PUT72_RS12615 (PUT72_12615)	rpoS	2694805..2695791 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
PUT72_RS12620 (PUT72_12620)	-	2695872..2696795 (-)	924	WP_213967845.1	peptidoglycan DD-metalloendopeptidase family protein	-
PUT72_RS12625 (PUT72_12625)	-	2696809..2697435 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PUT72_RS12630 (PUT72_12630)	surE	2697435..2698211 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
PUT72_RS12635 (PUT72_12635)	truD	2698211..2699254 (-)	1044	WP_213986830.1	tRNA pseudouridine(13) synthase TruD	-
PUT72_RS12640 (PUT72_12640)	ispF	2699300..2699776 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PUT72_RS12645 (PUT72_12645)	ispD	2699791..2700498 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PUT72_RS12650 (PUT72_12650)	ftsB	2700500..2700781 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=789036 PUT72_RS12615 WP_005380887.1 2694805..2695791(-) (rpoS) [Vibrio alginolyticus strain 20220413_2]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=789036 PUT72_RS12615 WP_005380887.1 2694805..2695791(-) (rpoS) [Vibrio alginolyticus strain 20220413_2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854