Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PUT72_RS12485 Genome accession   NZ_CP117994
Coordinates   2672639..2673157 (-) Length   172 a.a.
NCBI ID   WP_054574813.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 20220413_2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2667639..2678157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS12460 (PUT72_12460) rimM 2667728..2668276 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  PUT72_RS12465 (PUT72_12465) rpsP 2668306..2668554 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  PUT72_RS12470 (PUT72_12470) ffh 2668764..2670146 (-) 1383 WP_005385423.1 signal recognition particle protein -
  PUT72_RS12475 (PUT72_12475) - 2670371..2671165 (+) 795 WP_005379950.1 cytochrome C assembly family protein -
  PUT72_RS12480 (PUT72_12480) - 2671290..2672570 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  PUT72_RS12485 (PUT72_12485) luxS 2672639..2673157 (-) 519 WP_054574813.1 S-ribosylhomocysteine lyase Regulator
  PUT72_RS12490 (PUT72_12490) - 2673242..2673847 (-) 606 WP_238952115.1 hypothetical protein -
  PUT72_RS12495 (PUT72_12495) gshA 2673871..2675439 (-) 1569 WP_054574812.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.89 Da        Isoelectric Point: 5.0212

>NTDB_id=789033 PUT72_RS12485 WP_054574813.1 2672639..2673157(-) (luxS) [Vibrio alginolyticus strain 20220413_2]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSERQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=789033 PUT72_RS12485 WP_054574813.1 2672639..2673157(-) (luxS) [Vibrio alginolyticus strain 20220413_2]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGATTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCGGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86