Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PUT72_RS07095 Genome accession   NZ_CP117994
Coordinates   1571196..1572722 (-) Length   508 a.a.
NCBI ID   WP_065274521.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 20220413_2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566196..1577722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS07075 (PUT72_07075) - 1566215..1567645 (-) 1431 WP_170893798.1 lipopolysaccharide biosynthesis protein -
  PUT72_RS07080 (PUT72_07080) - 1567638..1568810 (-) 1173 WP_005377641.1 glycosyltransferase -
  PUT72_RS07085 (PUT72_07085) - 1568822..1570006 (-) 1185 WP_274342490.1 glycosyltransferase -
  PUT72_RS07090 (PUT72_07090) - 1570151..1571221 (-) 1071 WP_137281981.1 glycosyltransferase family 4 protein -
  PUT72_RS07095 (PUT72_07095) luxO 1571196..1572722 (-) 1527 WP_065274521.1 sigma-54-dependent transcriptional regulator Regulator
  PUT72_RS07100 (PUT72_07100) - 1573031..1573411 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  PUT72_RS07105 (PUT72_07105) - 1573423..1574109 (-) 687 WP_238952333.1 AAA family ATPase -
  PUT72_RS07110 (PUT72_07110) - 1574109..1576211 (-) 2103 WP_213893836.1 SLBB domain-containing protein -
  PUT72_RS07115 (PUT72_07115) - 1576208..1577074 (-) 867 WP_213885316.1 OmpA family protein -
  PUT72_RS07120 (PUT72_07120) - 1577101..1577421 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56614.57 Da        Isoelectric Point: 5.9083

>NTDB_id=789024 PUT72_RS07095 WP_065274521.1 1571196..1572722(-) (luxO) [Vibrio alginolyticus strain 20220413_2]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESTNIAPITPPPVYTEELSPSAVEPSITAAELPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=789024 PUT72_RS07095 WP_065274521.1 1571196..1572722(-) (luxO) [Vibrio alginolyticus strain 20220413_2]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAACTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCGCACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
TGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGTTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTTCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAACAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACTTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484