Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PUT72_RS06170 Genome accession   NZ_CP117994
Coordinates   1351973..1353394 (-) Length   473 a.a.
NCBI ID   WP_017820876.1    Uniprot ID   A0A7Y0MUH5
Organism   Vibrio alginolyticus strain 20220413_2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1346973..1358394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS06145 (PUT72_06145) - 1347504..1348154 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  PUT72_RS06150 (PUT72_06150) purT 1348227..1349402 (-) 1176 WP_033905149.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  PUT72_RS06155 (PUT72_06155) cdd 1349546..1350433 (-) 888 WP_005377892.1 cytidine deaminase -
  PUT72_RS06160 (PUT72_06160) - 1350864..1351541 (-) 678 WP_005377888.1 LrgB family protein -
  PUT72_RS06165 (PUT72_06165) - 1351543..1351917 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  PUT72_RS06170 (PUT72_06170) sbcB 1351973..1353394 (-) 1422 WP_017820876.1 exodeoxyribonuclease I Machinery gene
  PUT72_RS06175 (PUT72_06175) - 1353552..1354925 (-) 1374 WP_047100707.1 L-cystine transporter -
  PUT72_RS06180 (PUT72_06180) - 1355126..1355815 (-) 690 WP_047100706.1 NAD(P)H-binding protein -
  PUT72_RS06185 (PUT72_06185) cobT 1356064..1357107 (+) 1044 WP_104979038.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  PUT72_RS06190 (PUT72_06190) - 1357137..1357913 (+) 777 WP_031777196.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54446.62 Da        Isoelectric Point: 4.8633

>NTDB_id=789023 PUT72_RS06170 WP_017820876.1 1351973..1353394(-) (sbcB) [Vibrio alginolyticus strain 20220413_2]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=789023 PUT72_RS06170 WP_017820876.1 1351973..1353394(-) (sbcB) [Vibrio alginolyticus strain 20220413_2]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAGCATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0MUH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793