Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PUT72_RS01245 Genome accession   NZ_CP117994
Coordinates   275651..276658 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 20220413_2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 270651..281658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS01225 (PUT72_01225) - 270977..271894 (-) 918 WP_104969015.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PUT72_RS01230 (PUT72_01230) hslU 272856..274187 (-) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  PUT72_RS01235 (PUT72_01235) hslV 274211..274762 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  PUT72_RS01240 (PUT72_01240) ftsN 274878..275426 (-) 549 WP_017820300.1 cell division protein FtsN -
  PUT72_RS01245 (PUT72_01245) cytR 275651..276658 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  PUT72_RS01250 (PUT72_01250) priA 276983..279187 (-) 2205 WP_170890677.1 primosomal protein N' -
  PUT72_RS01255 (PUT72_01255) rpmE 279483..279704 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  PUT72_RS01260 (PUT72_01260) rpsJ 280160..280471 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  PUT72_RS01265 (PUT72_01265) rplC 280486..281115 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=789013 PUT72_RS01245 WP_005379543.1 275651..276658(-) (cytR) [Vibrio alginolyticus strain 20220413_2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=789013 PUT72_RS01245 WP_005379543.1 275651..276658(-) (cytR) [Vibrio alginolyticus strain 20220413_2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTATCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTAAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTCCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCAGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAATTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCGCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893