Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PUN50_RS09860 Genome accession   NZ_CP117988
Coordinates   2109766..2111187 (+) Length   473 a.a.
NCBI ID   WP_005428021.1    Uniprot ID   A0AAQ2XXF0
Organism   Vibrio campbellii strain 20220413_1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2104766..2116187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS09840 (PUN50_09840) - 2105158..2105769 (-) 612 WP_274290279.1 flavin reductase family protein -
  PUN50_RS09845 (PUN50_09845) - 2106435..2107130 (+) 696 WP_274290280.1 NAD(P)H-binding protein -
  PUN50_RS09850 (PUN50_09850) - 2107324..2108697 (+) 1374 WP_045378534.1 L-cystine transporter -
  PUN50_RS09855 (PUN50_09855) - 2108924..2109604 (+) 681 WP_274290281.1 DUF1826 domain-containing protein -
  PUN50_RS09860 (PUN50_09860) sbcB 2109766..2111187 (+) 1422 WP_005428021.1 exodeoxyribonuclease I Machinery gene
  PUN50_RS09865 (PUN50_09865) - 2111246..2111620 (+) 375 WP_051118379.1 CidA/LrgA family protein -
  PUN50_RS09870 (PUN50_09870) - 2111622..2112299 (+) 678 WP_274290282.1 LrgB family protein -
  PUN50_RS09875 (PUN50_09875) cdd 2112564..2113451 (+) 888 WP_005427951.1 cytidine deaminase -
  PUN50_RS09880 (PUN50_09880) - 2113515..2114213 (-) 699 WP_105065204.1 cytidine deaminase -
  PUN50_RS09885 (PUN50_09885) purT 2114422..2115597 (+) 1176 WP_274290283.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54525.84 Da        Isoelectric Point: 4.9293

>NTDB_id=788966 PUN50_RS09860 WP_005428021.1 2109766..2111187(+) (sbcB) [Vibrio campbellii strain 20220413_1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=788966 PUN50_RS09860 WP_005428021.1 2109766..2111187(+) (sbcB) [Vibrio campbellii strain 20220413_1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTCATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGAGCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTTGCGCCTGCTAAGACTCTAACTGCGGAAAATGCAGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTAGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793