Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PUN50_RS09265 Genome accession   NZ_CP117988
Coordinates   1963592..1965133 (+) Length   513 a.a.
NCBI ID   WP_045373947.1    Uniprot ID   A0AAQ2XW28
Organism   Vibrio campbellii strain 20220413_1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958592..1970133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS09240 (PUN50_09240) - 1958997..1959317 (+) 321 WP_005427675.1 STAS domain-containing protein -
  PUN50_RS09245 (PUN50_09245) - 1959343..1960197 (+) 855 WP_005427695.1 OmpA family protein -
  PUN50_RS09250 (PUN50_09250) - 1960194..1962296 (+) 2103 WP_274290210.1 SLBB domain-containing protein -
  PUN50_RS09255 (PUN50_09255) - 1962296..1962985 (+) 690 WP_077261479.1 AAA family ATPase -
  PUN50_RS09260 (PUN50_09260) - 1962998..1963381 (+) 384 WP_005427799.1 Hpt domain-containing protein -
  PUN50_RS09265 (PUN50_09265) luxO 1963592..1965133 (+) 1542 WP_045373947.1 sigma-54-dependent transcriptional regulator Regulator
  PUN50_RS09270 (PUN50_09270) - 1965108..1966184 (+) 1077 WP_274290211.1 glycosyltransferase -
  PUN50_RS09275 (PUN50_09275) - 1966337..1967521 (+) 1185 WP_274290212.1 glycosyltransferase -
  PUN50_RS09280 (PUN50_09280) - 1967532..1968704 (+) 1173 WP_274290213.1 glycosyltransferase family 4 protein -
  PUN50_RS09285 (PUN50_09285) - 1968697..1970118 (+) 1422 WP_274291245.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57558.51 Da        Isoelectric Point: 6.1668

>NTDB_id=788965 PUN50_RS09265 WP_045373947.1 1963592..1965133(+) (luxO) [Vibrio campbellii strain 20220413_1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITEQTDSVQNEAFPTSEPTSATYSFSEPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=788965 PUN50_RS09265 WP_045373947.1 1963592..1965133(+) (luxO) [Vibrio campbellii strain 20220413_1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAGACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGAGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCAGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGCCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCTACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCAGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACCACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAGGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCAAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACACCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTTCCAACCTCGGA
GCCAACAAGCGCCACCTATTCTTTCTCTGAGCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAGCGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCGGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481