Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PUN50_RS05830 Genome accession   NZ_CP117988
Coordinates   1241334..1242737 (+) Length   467 a.a.
NCBI ID   WP_038889850.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236334..1247737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS05810 (PUN50_05810) - 1236359..1237690 (+) 1332 WP_086369099.1 excinuclease ABC subunit B -
  PUN50_RS05815 (PUN50_05815) - 1237710..1238150 (+) 441 WP_038889848.1 hypothetical protein -
  PUN50_RS05825 (PUN50_05825) uvrB 1238961..1240991 (+) 2031 WP_045379097.1 excinuclease ABC subunit UvrB -
  PUN50_RS05830 (PUN50_05830) luxO 1241334..1242737 (+) 1404 WP_038889850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PUN50_RS05835 (PUN50_05835) luxU 1242734..1243078 (+) 345 WP_274291005.1 quorum-sensing phosphorelay protein LuxU -
  PUN50_RS05840 (PUN50_05840) - 1243195..1244088 (-) 894 WP_005531401.1 YvcK family protein -
  PUN50_RS05845 (PUN50_05845) moaA 1244386..1245375 (+) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  PUN50_RS05850 (PUN50_05850) moaB 1245476..1245988 (+) 513 WP_274291006.1 molybdenum cofactor biosynthesis protein B -
  PUN50_RS05855 (PUN50_05855) moaC 1246015..1246491 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  PUN50_RS05860 (PUN50_05860) moaD 1246491..1246748 (+) 258 WP_005433220.1 molybdopterin synthase sulfur carrier subunit -
  PUN50_RS05865 (PUN50_05865) moaE 1246750..1247205 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52154.68 Da        Isoelectric Point: 5.8849

>NTDB_id=788963 PUN50_RS05830 WP_038889850.1 1241334..1242737(+) (luxO) [Vibrio campbellii strain 20220413_1]
MQQMTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=788963 PUN50_RS05830 WP_038889850.1 1241334..1242737(+) (luxO) [Vibrio campbellii strain 20220413_1]
ATGCAACAAATGACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCGGAGGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACCTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCCTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGCTTCCGTGAAGACTTGTATTACCGCTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCTCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAGTTGCAAAACGTATTGCGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATCTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829