Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PUN50_RS02845 Genome accession   NZ_CP117988
Coordinates   588124..588642 (+) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain 20220413_1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 583124..593642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS02835 (PUN50_02835) gshA 585841..587409 (+) 1569 WP_274290831.1 glutamate--cysteine ligase -
  PUN50_RS02840 (PUN50_02840) - 587471..588034 (+) 564 WP_012128887.1 hypothetical protein -
  PUN50_RS02845 (PUN50_02845) luxS 588124..588642 (+) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  PUN50_RS02850 (PUN50_02850) - 588730..590004 (-) 1275 WP_005426658.1 HlyC/CorC family transporter -
  PUN50_RS02855 (PUN50_02855) - 590160..590954 (-) 795 WP_005426660.1 cytochrome C assembly family protein -
  PUN50_RS02860 (PUN50_02860) ffh 591168..592550 (+) 1383 WP_005462555.1 signal recognition particle protein -
  PUN50_RS02865 (PUN50_02865) rpsP 592761..593009 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  PUN50_RS02870 (PUN50_02870) rimM 593037..593585 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=788956 PUN50_RS02845 WP_010643243.1 588124..588642(+) (luxS) [Vibrio campbellii strain 20220413_1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=788956 PUN50_RS02845 WP_010643243.1 588124..588642(+) (luxS) [Vibrio campbellii strain 20220413_1]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCCAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCTAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86