Detailed information NTG0788953

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PUN50_RS02715
• Genome accession: NZ_CP117988
• Coordinates: 565384..566370 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain 20220413_1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 560384..571370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUN50_RS02680 (PUN50_02680)	ftsB	560390..560671 (+)	282	WP_005452106.1	cell division protein FtsB	-
PUN50_RS02685 (PUN50_02685)	ispD	560673..561383 (+)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PUN50_RS02690 (PUN50_02690)	ispF	561398..561874 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PUN50_RS02695 (PUN50_02695)	truD	561920..562963 (+)	1044	WP_077200201.1	tRNA pseudouridine(13) synthase TruD	-
PUN50_RS02700 (PUN50_02700)	surE	562963..563739 (+)	777	WP_077262186.1	5'/3'-nucleotidase SurE	-
PUN50_RS02705 (PUN50_02705)	-	563739..564365 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PUN50_RS02710 (PUN50_02710)	-	564380..565303 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
PUN50_RS02715 (PUN50_02715)	rpoS	565384..566370 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
PUN50_RS02720 (PUN50_02720)	mutS	566460..569021 (-)	2562	WP_038891104.1	DNA mismatch repair protein MutS	-
PUN50_RS02725 (PUN50_02725)	pncC	569107..569589 (+)	483	WP_005425360.1	nicotinamide-nucleotide amidase	-
PUN50_RS02730 (PUN50_02730)	recA	569790..570833 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=788953 PUN50_RS02715 WP_005425361.1 565384..566370(+) (rpoS) [Vibrio campbellii strain 20220413_1]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=788953 PUN50_RS02715 WP_005425361.1 565384..566370(+) (rpoS) [Vibrio campbellii strain 20220413_1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGTAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGCCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCGGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGGCGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857