Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PUN35_RS14630 Genome accession   NZ_CP117986
Coordinates   2718282..2718572 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus sp. N3378-2at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713282..2723572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS14615 - 2713477..2714790 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  PUN35_RS14620 - 2714946..2715713 (-) 768 WP_014478595.1 TatD family hydrolase -
  PUN35_RS14625 metG 2715793..2717787 (-) 1995 WP_014478594.1 methionine--tRNA ligase -
  PUN35_RS14630 abrB 2718282..2718572 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  PUN35_RS14635 rsmI 2718621..2719499 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PUN35_RS14640 - 2719474..2719773 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  PUN35_RS14645 - 2719760..2720503 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PUN35_RS14650 yabA 2720562..2720921 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  PUN35_RS14655 ricT 2720936..2721763 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  PUN35_RS14660 holB 2721766..2722755 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  PUN35_RS14665 - 2722767..2723207 (-) 441 WP_009966249.1 YaaR family protein -
  PUN35_RS14670 darA 2723220..2723549 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=788917 PUN35_RS14630 WP_003226760.1 2718282..2718572(+) (abrB) [Bacillus sp. N3378-2at]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=788917 PUN35_RS14630 WP_003226760.1 2718282..2718572(+) (abrB) [Bacillus sp. N3378-2at]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1