Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Q7F19_RS13175 Genome accession   NZ_CP130942
Coordinates   2810874..2811380 (+) Length   168 a.a.
NCBI ID   WP_023436031.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-00048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2805874..2816380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7F19_RS13150 (Q7F19_13150) - 2806383..2807519 (+) 1137 WP_058201343.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  Q7F19_RS13155 (Q7F19_13155) - 2807516..2808178 (+) 663 WP_023436034.1 uracil-DNA glycosylase -
  Q7F19_RS13160 (Q7F19_13160) - 2808195..2808680 (-) 486 WP_023436033.1 TIR domain-containing protein -
  Q7F19_RS13165 (Q7F19_13165) - 2808724..2809311 (-) 588 WP_058201342.1 hypothetical protein -
  Q7F19_RS13170 (Q7F19_13170) - 2809315..2810457 (-) 1143 WP_071556422.1 toll/interleukin-1 receptor domain-containing protein -
  Q7F19_RS13175 (Q7F19_13175) radC 2810874..2811380 (+) 507 WP_023436031.1 DNA repair protein RadC Machinery gene
  Q7F19_RS13180 (Q7F19_13180) - 2811446..2812255 (-) 810 WP_023436030.1 hypothetical protein -
  Q7F19_RS13185 (Q7F19_13185) - 2812854..2813678 (+) 825 WP_023436029.1 DUF932 domain-containing protein -
  Q7F19_RS13190 (Q7F19_13190) - 2813759..2815795 (+) 2037 WP_023436028.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18767.37 Da        Isoelectric Point: 6.6104

>NTDB_id=788912 Q7F19_RS13175 WP_023436031.1 2810874..2811380(+) (radC) [Pseudomonas aeruginosa strain 2023CK-00048]
MSQLSLSSDASLLVRDGHGRYLPASADQILEAARRVIDQKMQRGTEFSSPAVVKEYLRTKLAGFEHEVFAILFLDTRHRL
IEYVEMFRGTIDQASVYPREVVKEALQHNAAAVIFAHNHPSGNLEPSAADRTLTQRLKEALALVEVRTLDHVIVAGDRTT
AFAELGWL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=788912 Q7F19_RS13175 WP_023436031.1 2810874..2811380(+) (radC) [Pseudomonas aeruginosa strain 2023CK-00048]
ATGTCGCAGCTTTCCCTCTCTTCCGATGCCTCGCTGCTGGTGCGTGACGGCCATGGCCGCTATCTGCCGGCGTCGGCCGA
CCAGATTCTGGAGGCCGCGCGTCGGGTCATCGACCAGAAGATGCAGCGTGGTACCGAGTTCAGTTCGCCGGCAGTGGTCA
AGGAGTATCTGCGCACCAAACTCGCCGGCTTCGAGCATGAGGTCTTCGCAATCCTGTTCCTCGACACGCGCCATCGGCTG
ATCGAGTACGTCGAGATGTTCCGCGGCACCATCGACCAGGCATCGGTGTATCCGCGCGAGGTGGTCAAGGAGGCGCTGCA
GCACAATGCGGCGGCGGTGATCTTCGCGCACAACCATCCGAGCGGGAATCTCGAGCCGAGCGCCGCCGACAGGACGCTGA
CCCAGCGGCTCAAGGAGGCGCTGGCGCTGGTCGAGGTGCGCACGCTGGATCATGTCATTGTCGCTGGCGACCGGACGACG
GCATTTGCCGAACTCGGTTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.794

80.952

0.387