Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PUN35_RS09055 Genome accession   NZ_CP117986
Coordinates   1645334..1645912 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. N3378-2at     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640334..1650912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS09020 lepB 1640341..1640847 (-) 507 WP_003233128.1 signal peptidase I -
  PUN35_RS09025 - 1640849..1641472 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  PUN35_RS09030 - 1641624..1641995 (+) 372 WP_014476361.1 hypothetical protein -
  PUN35_RS09035 - 1642194..1642394 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PUN35_RS09040 - 1642391..1643860 (+) 1470 WP_014479374.1 sodium:solute symporter family protein -
  PUN35_RS09045 - 1643904..1644173 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  PUN35_RS09050 - 1644390..1645289 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  PUN35_RS09055 comK 1645334..1645912 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  PUN35_RS09060 - 1646205..1646438 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  PUN35_RS09065 - 1646466..1647323 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  PUN35_RS09070 - 1647427..1648955 (+) 1529 Protein_1804 FAD-dependent oxidoreductase -
  PUN35_RS22475 hemAT 1649211..1649588 (+) 378 Protein_1805 heme-based aerotactic transducer HemAT -
  PUN35_RS22480 - 1649595..1650392 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=788903 PUN35_RS09055 WP_003245329.1 1645334..1645912(-) (comK) [Bacillus sp. N3378-2at]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=788903 PUN35_RS09055 WP_003245329.1 1645334..1645912(-) (comK) [Bacillus sp. N3378-2at]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1