Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PUN35_RS06800 Genome accession   NZ_CP117986
Coordinates   1237534..1237812 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. N3378-2at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232534..1242812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS06780 ade 1232596..1234329 (-) 1734 WP_014479688.1 adenine deaminase -
  PUN35_RS06785 ktrC 1234484..1235149 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PUN35_RS06790 - 1235212..1236045 (-) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  PUN35_RS06795 kinC 1236061..1237344 (-) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  PUN35_RS06800 abrB 1237534..1237812 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PUN35_RS06805 mreBH 1238096..1239103 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PUN35_RS06810 - 1239204..1239338 (+) 135 WP_003238865.1 protein YkpC -
  PUN35_RS06815 - 1239447..1240679 (+) 1233 WP_003232341.1 aminopeptidase -
  PUN35_RS06820 - 1240713..1241624 (-) 912 WP_014479685.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=788889 PUN35_RS06800 WP_003244728.1 1237534..1237812(-) (abrB) [Bacillus sp. N3378-2at]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=788889 PUN35_RS06800 WP_003244728.1 1237534..1237812(-) (abrB) [Bacillus sp. N3378-2at]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576