Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PUN35_RS03415 Genome accession   NZ_CP117986
Coordinates   619351..619971 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus sp. N3378-2at     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 614351..624971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS03395 dnaD 614642..615340 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  PUN35_RS03400 nth 615359..616018 (+) 660 WP_009967580.1 endonuclease III -
  PUN35_RS03405 - 616015..616509 (+) 495 WP_009967579.1 YpoC family protein -
  PUN35_RS03410 - 616585..619329 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  PUN35_RS03415 recU 619351..619971 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  PUN35_RS03420 - 620012..620974 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  PUN35_RS03425 sspM 620999..621103 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PUN35_RS03430 - 621302..621547 (+) 246 WP_004398488.1 YppD family protein -
  PUN35_RS03435 - 621593..621964 (+) 372 WP_003246080.1 YppE family protein -
  PUN35_RS03440 - 622003..622191 (-) 189 WP_003230690.1 YppF family protein -
  PUN35_RS03445 - 622378..622755 (+) 378 WP_004398696.1 YppG family protein -
  PUN35_RS03450 - 622776..623195 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  PUN35_RS03455 - 623333..623839 (+) 507 WP_029726788.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=788884 PUN35_RS03415 WP_014480105.1 619351..619971(-) (recU) [Bacillus sp. N3378-2at]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=788884 PUN35_RS03415 WP_014480105.1 619351..619971(-) (recU) [Bacillus sp. N3378-2at]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995