Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PUN35_RS01800 Genome accession   NZ_CP117986
Coordinates   336888..337655 (+) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 331888..342655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS01770 pgpH 332184..334319 (+) 2136 WP_014480296.1 cyclic-di-AMP phosphodiesterase PgpH -
  PUN35_RS01775 ybeY 334320..334793 (+) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  PUN35_RS01780 - 334774..335145 (+) 372 WP_014480294.1 diacylglycerol kinase family protein -
  PUN35_RS01785 - 335264..335674 (+) 411 WP_014480293.1 cytidine deaminase -
  PUN35_RS01790 era 335655..336560 (+) 906 WP_003230051.1 GTPase Era -
  PUN35_RS01795 - 336708..336851 (+) 144 WP_003230053.1 YqzL family protein -
  PUN35_RS01800 recO 336888..337655 (+) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  PUN35_RS01805 glyQ 337952..338839 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  PUN35_RS01810 glyS 338832..340871 (+) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  PUN35_RS01815 ccpN 341004..341642 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  PUN35_RS01820 - 341668..342480 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=788872 PUN35_RS01800 WP_014480292.1 336888..337655(+) (recO) [Bacillus sp. N3378-2at]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=788872 PUN35_RS01800 WP_014480292.1 336888..337655(+) (recO) [Bacillus sp. N3378-2at]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992