Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PTA89_RS03045 Genome accession   NZ_CP117983
Coordinates   626554..628221 (+) Length   555 a.a.
NCBI ID   WP_081530304.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain B4311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621554..633221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA89_RS03015 folD 621936..622793 (+) 858 WP_003705927.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  PTA89_RS03020 xseA 622786..624126 (+) 1341 WP_003708051.1 exodeoxyribonuclease VII large subunit -
  PTA89_RS03025 - 624126..624353 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  PTA89_RS03030 - 624319..625236 (+) 918 WP_003699850.1 polyprenyl synthetase family protein -
  PTA89_RS03035 - 625239..626066 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  PTA89_RS03040 - 626091..626549 (+) 459 WP_003699854.1 arginine repressor -
  PTA89_RS03045 recN 626554..628221 (+) 1668 WP_081530304.1 DNA repair protein RecN Machinery gene
  PTA89_RS03050 lexA 628285..628905 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  PTA89_RS03055 - 629016..629306 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  PTA89_RS03060 - 629433..629657 (+) 225 WP_003699860.1 YneF family protein -
  PTA89_RS03065 yihA 629740..630330 (+) 591 WP_003708045.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PTA89_RS03070 - 630348..630647 (+) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  PTA89_RS03075 - 630751..632565 (+) 1815 WP_268857635.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63237.96 Da        Isoelectric Point: 4.8501

>NTDB_id=788847 PTA89_RS03045 WP_081530304.1 626554..628221(+) (recN) [Ligilactobacillus salivarius strain B4311]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=788847 PTA89_RS03045 WP_081530304.1 626554..628221(+) (recN) [Ligilactobacillus salivarius strain B4311]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ATCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAGAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499