Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PT798_RS11655 Genome accession   NZ_CP117979
Coordinates   2392397..2393113 (+) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain B-41012     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387397..2398113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS11625 - 2387617..2388243 (+) 627 WP_000522384.1 nitroreductase family protein -
  PT798_RS11630 - 2388604..2389389 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  PT798_RS11635 hld 2389986..2390066 (-) 81 WP_000046022.1 delta-hemolysin -
  PT798_RS11640 - 2390356..2390919 (+) 564 WP_001105696.1 accessory gene regulator ArgB-like protein -
  PT798_RS11645 - 2390922..2391065 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide -
  PT798_RS11650 - 2391095..2392378 (+) 1284 WP_000447888.1 sensor histidine kinase -
  PT798_RS11655 agrA 2392397..2393113 (+) 717 WP_000688498.1 LytTR family DNA-binding domain-containing protein Regulator
  PT798_RS11660 - 2393193..2393302 (+) 110 Protein_2264 hypothetical protein -
  PT798_RS11665 - 2393490..2394449 (-) 960 WP_001253314.1 carbohydrate kinase -
  PT798_RS11670 - 2394446..2395930 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  PT798_RS11675 - 2396079..2397029 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=788831 PT798_RS11655 WP_000688498.1 2392397..2393113(+) (agrA) [Staphylococcus aureus strain B-41012]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=788831 PT798_RS11655 WP_000688498.1 2392397..2393113(+) (agrA) [Staphylococcus aureus strain B-41012]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTTAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996