Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QML92_RS00200 Genome accession   NZ_AP025937
Coordinates   37373..38143 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32373..43143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML92_RS00180 (PC0780_00290) - 34383..34820 (+) 438 WP_000076507.1 CoA-binding protein -
  QML92_RS00185 - 34861..35019 (+) 159 WP_001842139.1 hypothetical protein -
  QML92_RS00190 (PC0780_00300) - 35048..36058 (-) 1011 WP_000009179.1 YeiH family protein -
  QML92_RS00195 (PC0780_00310) - 36207..37376 (+) 1170 WP_000366379.1 pyridoxal phosphate-dependent aminotransferase -
  QML92_RS00200 (PC0780_00320) recO 37373..38143 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  QML92_RS00205 (PC0780_00330) plsX 38140..39132 (+) 993 WP_000717460.1 phosphate acyltransferase PlsX -
  QML92_RS00210 (PC0780_00340) - 39138..39371 (+) 234 WP_000136447.1 acyl carrier protein -
  QML92_RS00215 (PC0780_00350) - 39417..39707 (+) 291 Protein_35 IS5/IS1182 family transposase -
  QML92_RS00220 (PC0780_00360) blpU 39910..40140 (+) 231 WP_001093068.1 bacteriocin-like peptide BlpU -
  QML92_RS00225 - 40143..40268 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  QML92_RS00230 (PC0780_00370) comA 40855..43008 (+) 2154 WP_000668287.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=78876 QML92_RS00200 WP_000616162.1 37373..38143(+) (recO) [Streptococcus pneumoniae strain PZ900700792]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=78876 QML92_RS00200 WP_000616162.1 37373..38143(+) (recO) [Streptococcus pneumoniae strain PZ900700792]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment