Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PT602_RS13680 Genome accession   NZ_CP117968
Coordinates   2667488..2668858 (+) Length   456 a.a.
NCBI ID   WP_144163591.1    Uniprot ID   -
Organism   Allobacillus halotolerans strain BCRC 17939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2662488..2673858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT602_RS13660 - 2662811..2663287 (+) 477 WP_144163587.1 CtsR family transcriptional regulator -
  PT602_RS13665 - 2663290..2663829 (+) 540 WP_144163588.1 UvrB/UvrC motif-containing protein -
  PT602_RS13670 - 2663829..2664899 (+) 1071 WP_144163589.1 protein arginine kinase -
  PT602_RS13675 - 2664918..2667377 (+) 2460 WP_216687406.1 ATP-dependent Clp protease ATP-binding subunit -
  PT602_RS13680 radA 2667488..2668858 (+) 1371 WP_144163591.1 DNA repair protein RadA Machinery gene
  PT602_RS13685 - 2669007..2670092 (+) 1086 WP_216687407.1 PIN/TRAM domain-containing protein -
  PT602_RS13690 ispD 2670274..2670978 (+) 705 WP_216687408.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PT602_RS13695 ispF 2670979..2671455 (+) 477 WP_144163594.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PT602_RS13700 gltX 2671489..2672964 (+) 1476 WP_144163595.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50350.94 Da        Isoelectric Point: 7.4854

>NTDB_id=788631 PT602_RS13680 WP_144163591.1 2667488..2668858(+) (radA) [Allobacillus halotolerans strain BCRC 17939]
MAKKKSVFMCQECGYESPKWMGKCPACHQWNSFVEEKIQTTKDRHTLGQQESRTRRKPTTINQVSMQDEKRIRIDMEEMN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQLSSQLAAAKHAALYISGEESEKQTKLRASRLNINNDSLYILSETNLEYVID
SINEMNPDFVVIDSIQTIYLDTVTSAAGSVSQVRECTSALMKVAKTKGIPIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAFRILRSVKNRFGSTHEMGIFEMKEEGLVEVSNPSEIFLEERSQGIAGSTIVASMEGTRPMLVEIQALISPTQFG
NARRMATGLDHNRVPLLMAVLEKRAGLLLQNQDAYVKVAGGVKLDEPAIDLAVAVCIASSFRDQPTQKDDVFIGEVGLTG
EIRRVSRIEQRIKEAQKLGFKRVILPNRNLSGISTPDGIKLHGVDSVHDALRVALE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=788631 PT602_RS13680 WP_144163591.1 2667488..2668858(+) (radA) [Allobacillus halotolerans strain BCRC 17939]
ATGGCAAAGAAGAAATCAGTTTTCATGTGTCAAGAATGTGGGTATGAATCCCCGAAATGGATGGGAAAATGTCCCGCATG
TCATCAGTGGAATAGCTTTGTAGAAGAAAAAATACAGACGACGAAAGATCGACATACTCTTGGACAACAAGAAAGTCGGA
CGAGAAGAAAACCGACGACAATTAATCAAGTGTCCATGCAGGATGAAAAGCGGATACGTATTGATATGGAGGAGATGAAC
CGAGTTCTCGGTGGAGGGGTCGTACCAGGATCACTTGTTTTGATTGGAGGCGATCCCGGTATAGGTAAATCCACGTTATT
ATTGCAGTTATCGTCCCAGTTAGCAGCCGCAAAACATGCAGCTCTTTATATTTCGGGTGAGGAATCGGAGAAGCAAACAA
AGCTTCGTGCAAGTCGGTTAAATATCAATAATGACTCTCTATATATCCTTTCAGAAACAAACTTGGAATATGTGATCGAC
TCCATTAATGAAATGAATCCTGATTTTGTCGTGATCGATTCGATTCAGACGATTTACTTGGATACTGTTACATCTGCAGC
CGGGTCGGTTTCTCAAGTTCGTGAATGTACTTCAGCCTTAATGAAAGTAGCCAAAACGAAAGGCATCCCAATTTTCATTG
TTGGTCACGTGACGAAAGAAGGTGCAATTGCAGGCCCACGTCTTCTTGAGCATATGGTTGATACGGTTCTTTACTTTGAA
GGTGAGCGCCATCATGCTTTCCGTATTTTGCGCAGTGTCAAAAACCGCTTTGGCAGTACGCATGAAATGGGTATTTTTGA
AATGAAAGAAGAAGGGTTGGTCGAAGTCAGTAATCCATCGGAAATTTTCTTAGAAGAACGCTCACAAGGAATTGCCGGGT
CGACGATTGTTGCCTCGATGGAAGGGACAAGGCCGATGTTGGTGGAGATCCAGGCACTTATTTCTCCGACACAATTTGGG
AATGCTAGAAGAATGGCGACCGGTTTAGATCATAACCGTGTGCCTCTATTGATGGCCGTCTTAGAAAAGCGAGCTGGCCT
TCTTCTACAAAACCAAGATGCTTACGTGAAAGTTGCGGGCGGCGTGAAATTAGATGAACCGGCCATCGATTTGGCTGTGG
CTGTGTGCATTGCATCAAGCTTCAGAGACCAGCCGACGCAAAAAGATGATGTATTTATCGGAGAAGTAGGACTTACAGGT
GAAATCAGACGTGTGTCTCGGATTGAGCAGCGGATCAAGGAAGCACAAAAATTAGGCTTCAAACGAGTGATTTTACCTAA
TCGGAATTTAAGTGGAATTTCAACACCGGACGGAATTAAATTACATGGTGTAGATTCTGTTCATGATGCTTTACGGGTGG
CTCTGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.149

100

0.721
  radA Streptococcus mitis NCTC 12261

61.726

99.123

0.612
  radA Streptococcus pneumoniae Rx1

61.726

99.123

0.612
  radA Streptococcus pneumoniae D39

61.726

99.123

0.612
  radA Streptococcus pneumoniae R6

61.726

99.123

0.612
  radA Streptococcus pneumoniae TIGR4

61.726

99.123

0.612
  radA Streptococcus mitis SK321

61.726

99.123

0.612