Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PT602_RS06825 Genome accession   NZ_CP117968
Coordinates   1285846..1287567 (-) Length   573 a.a.
NCBI ID   WP_144158564.1    Uniprot ID   -
Organism   Allobacillus halotolerans strain BCRC 17939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280846..1292567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT602_RS06805 - 1281862..1281984 (-) 123 WP_255439595.1 hypothetical protein -
  PT602_RS06810 - 1282046..1283407 (-) 1362 WP_216686538.1 aspartate kinase -
  PT602_RS06815 spo0A 1283546..1284325 (-) 780 WP_216686539.1 sporulation transcription factor Spo0A -
  PT602_RS06820 spoIVB 1284544..1285617 (-) 1074 WP_144158567.1 SpoIVB peptidase -
  PT602_RS06825 recN 1285846..1287567 (-) 1722 WP_144158564.1 DNA repair protein RecN Machinery gene
  PT602_RS06830 ahrC 1287581..1288033 (-) 453 WP_216686540.1 transcriptional regulator AhrC/ArgR -
  PT602_RS06835 - 1288107..1288913 (-) 807 WP_144158556.1 TlyA family RNA methyltransferase -
  PT602_RS06840 dxs 1288917..1290809 (-) 1893 WP_144158553.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PT602_RS06845 - 1290827..1291435 (-) 609 WP_144158550.1 hypothetical protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65762.54 Da        Isoelectric Point: 4.9281

>NTDB_id=788614 PT602_RS06825 WP_144158564.1 1285846..1287567(-) (recN) [Allobacillus halotolerans strain BCRC 17939]
MLGQLSIKDFAIIDEITLDFKDGLTVLTGETGAGKSIIIDAIQLLAGARASVEFVRHNQDQARIEGLFFIDDEKHEVYDV
LSHFHLPIDEEGNIILERYITAKGKSICRVNHKLVTLAILKEVGSKLIDIHSQHETQSLMNPEQHIELMDQFDAKKITSS
KNDYLMIFNELKKAKERMKELSESEHKTNERLDLLTFQLSELQEAQLEPNEDVQLEKERNQLANYERIFDGLQTAYGSLY
GENRGLDFLSNAMNALEQIEDVDDQLQKISEQMKSHYFALEELSFDIRHELDQMEFHPDRLNEIESRLFELNRLKRKYNK
DLEGLMSHMAKMEEELEQLQHRETHLQSYEKQIDELTKDALIEAEQLHTLRKKISVDLTKEIQQELKDLYLEKAVFEVDF
TQPSGDVNWKDKSIRLTHEGFDQVQFKISTNPGEPLKPLHKVASGGEISRIMLALKRIFSKHQGITSVIFDEVDTGVSGR
VAQAIAQKIVDISKGSQVLCISHLPQVAAMADQHYRIEKIQKNGESTRTTVNLLTDEQAIEEIGRMISGETMTESTKQHA
KELIEQSIQLKNA

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=788614 PT602_RS06825 WP_144158564.1 1285846..1287567(-) (recN) [Allobacillus halotolerans strain BCRC 17939]
ATGCTTGGTCAACTTTCAATCAAAGATTTTGCAATCATTGATGAAATAACATTAGATTTTAAAGATGGATTAACCGTGCT
TACAGGGGAAACAGGGGCTGGTAAATCCATTATTATTGATGCAATTCAATTGTTGGCAGGTGCACGGGCTTCAGTTGAAT
TTGTACGTCACAATCAAGACCAAGCAAGGATTGAAGGACTCTTCTTTATTGATGATGAAAAACATGAAGTATATGATGTA
CTTTCGCATTTTCATTTACCGATTGATGAAGAAGGAAATATCATTTTAGAACGATACATAACGGCTAAAGGAAAAAGTAT
ATGTCGGGTAAATCATAAATTGGTGACTTTAGCAATCCTGAAAGAAGTTGGAAGTAAGCTAATTGATATACATAGCCAAC
ATGAAACACAATCATTAATGAATCCTGAACAGCATATTGAGTTGATGGATCAATTTGATGCAAAAAAAATAACCTCTTCT
AAAAATGATTATTTAATGATTTTTAATGAACTGAAGAAAGCTAAAGAACGAATGAAAGAGCTTTCTGAAAGCGAACATAA
AACGAACGAACGTCTAGACTTACTGACTTTTCAATTGAGTGAACTTCAAGAAGCTCAACTGGAACCGAATGAAGACGTAC
AATTGGAAAAAGAACGAAATCAGTTAGCGAATTATGAGCGGATTTTTGATGGACTTCAAACAGCTTATGGCTCCCTTTAT
GGTGAAAACAGAGGACTTGATTTCTTATCCAATGCGATGAATGCACTCGAACAAATTGAAGATGTAGATGACCAATTACA
AAAGATTTCAGAACAAATGAAGTCACATTATTTTGCTTTAGAGGAATTAAGCTTTGATATCCGGCATGAATTAGATCAGA
TGGAATTTCATCCTGATCGGCTAAATGAGATTGAATCCAGATTATTTGAATTAAATCGACTGAAGAGAAAGTACAATAAA
GATTTGGAAGGGCTCATGTCTCATATGGCTAAAATGGAAGAAGAACTTGAGCAACTTCAACATCGCGAAACTCATCTACA
GTCTTACGAAAAGCAGATTGATGAACTGACTAAGGATGCCTTAATTGAAGCAGAACAGCTGCATACACTACGGAAAAAGA
TCAGCGTTGACTTAACGAAAGAAATTCAACAGGAATTGAAGGACTTATATTTAGAAAAAGCGGTTTTTGAAGTTGACTTC
ACGCAACCTTCAGGTGATGTGAATTGGAAAGATAAATCAATCAGATTGACTCATGAAGGTTTTGATCAAGTGCAATTCAA
AATTAGCACAAATCCAGGAGAACCCTTAAAGCCTCTCCACAAAGTGGCTTCAGGCGGTGAAATCTCAAGAATTATGCTTG
CGCTAAAACGAATCTTTTCTAAGCACCAAGGGATTACGAGCGTAATTTTCGATGAAGTCGATACAGGAGTCAGTGGCCGG
GTCGCACAAGCGATCGCTCAAAAAATCGTTGATATTTCTAAAGGTTCTCAAGTACTCTGTATTTCCCATTTACCGCAAGT
AGCGGCAATGGCTGATCAACATTACCGTATTGAAAAAATTCAAAAAAATGGTGAATCGACACGAACAACAGTCAATTTAT
TGACCGATGAACAGGCGATAGAAGAGATCGGTCGGATGATTTCTGGAGAAACAATGACAGAATCAACTAAACAACATGCC
AAAGAACTGATTGAACAATCGATTCAGTTGAAAAATGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.74

100

0.501