Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PT602_RS00915 Genome accession   NZ_CP117968
Coordinates   153738..154688 (-) Length   316 a.a.
NCBI ID   WP_216687265.1    Uniprot ID   -
Organism   Allobacillus halotolerans strain BCRC 17939     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148738..159688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT602_RS00890 - 149577..150434 (+) 858 WP_216687261.1 YusW family protein -
  PT602_RS00895 - 150624..150869 (+) 246 WP_216687262.1 hypothetical protein -
  PT602_RS00900 - 151075..152013 (-) 939 WP_144162342.1 siderophore ABC transporter substrate-binding protein -
  PT602_RS00905 - 152046..152804 (-) 759 WP_216687263.1 ABC transporter ATP-binding protein -
  PT602_RS00910 - 152801..153745 (-) 945 WP_216687264.1 iron chelate uptake ABC transporter family permease subunit -
  PT602_RS00915 ceuB 153738..154688 (-) 951 WP_216687265.1 ABC transporter permease Machinery gene
  PT602_RS00920 - 155199..155525 (-) 327 WP_216687266.1 four-helix bundle copper-binding protein -
  PT602_RS00925 - 155663..156703 (+) 1041 WP_216687267.1 C45 family autoproteolytic acyltransferase/hydolase -
  PT602_RS00930 - 156858..157820 (+) 963 WP_216687268.1 threonine/serine dehydratase -
  PT602_RS00935 - 157922..158491 (+) 570 WP_216687269.1 tetratricopeptide repeat protein -
  PT602_RS00940 - 158755..159408 (+) 654 WP_144162366.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34740.75 Da        Isoelectric Point: 10.0111

>NTDB_id=788606 PT602_RS00915 WP_216687265.1 153738..154688(-) (ceuB) [Allobacillus halotolerans strain BCRC 17939]
MKIRYLVIALVVFSVSSVFIGVSSISLTDIFHLNEFQQQILLHSRLPRLISIIIAGASMAICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVSMLAFSAANPLFRVGSAFFFALLGTFLFMKLLDKIKFKDAIFIPLVGIMFGNIIGSITMFFAYKNDMI
QTITAWLQGDFSMILSGSYELLYISIPALFIAYFFANKFTIAGMGEDFSINLGMNHKRVVNVGLIIVAVSTSVVVLTVGV
IPFLGLIIPNIVSIYQGDNLRSNLPHTALLGAVFVLFCDILGRVLIYPYEIPIGLTVGVIGSGMFIYLLLRRKKYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=788606 PT602_RS00915 WP_216687265.1 153738..154688(-) (ceuB) [Allobacillus halotolerans strain BCRC 17939]
ATGAAAATTAGATACTTAGTGATCGCTTTAGTTGTATTCTCAGTAAGCTCTGTTTTTATCGGAGTTTCAAGTATTAGCTT
AACTGATATTTTCCATTTAAATGAATTTCAGCAACAGATTTTATTGCACAGCCGACTTCCTCGTTTAATCAGTATCATCA
TCGCGGGAGCGAGCATGGCCATTTGTGGATTGATTATGCAGCAGTTAAGCCGAAACAAATTTGTTTCTCCAACGACGGCT
GGAACGATGGATTCAGCAAGATTAGGTATTCTCGTATCCATGCTTGCATTCTCAGCGGCAAATCCACTCTTCCGGGTAGG
TAGCGCTTTTTTCTTTGCTTTGCTCGGTACATTTCTATTTATGAAATTACTCGATAAGATCAAATTCAAAGACGCGATAT
TCATTCCATTGGTCGGAATCATGTTCGGAAATATCATCGGTTCAATCACAATGTTTTTTGCTTATAAAAACGATATGATT
CAAACGATTACTGCCTGGTTGCAAGGTGACTTTTCGATGATCTTATCTGGAAGCTATGAGCTGTTATACATAAGTATTCC
AGCACTATTCATCGCTTACTTTTTTGCGAATAAGTTCACGATTGCCGGGATGGGTGAGGATTTTTCCATTAACCTTGGAA
TGAATCATAAACGAGTGGTTAATGTCGGGTTGATCATTGTTGCCGTATCGACTTCTGTCGTTGTGTTGACAGTTGGGGTC
ATTCCATTTTTAGGATTGATCATTCCGAATATCGTCTCCATTTATCAGGGAGATAATTTACGTAGTAATCTACCACATAC
CGCTTTACTCGGCGCTGTGTTTGTCTTGTTTTGTGACATTTTAGGAAGAGTGTTGATTTATCCTTACGAGATTCCAATCG
GATTAACGGTCGGTGTGATTGGAAGCGGCATGTTCATTTATCTTTTATTACGGAGAAAGAAATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538