Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PT259_RS00515 Genome accession   NZ_CP117956
Coordinates   129076..130827 (+) Length   583 a.a.
NCBI ID   WP_011742638.1    Uniprot ID   A0ZZJ1
Organism   Bifidobacterium adolescentis strain LMG 10502     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 124076..135827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT259_RS00490 - 124790..125704 (-) 915 WP_011742635.1 thiazole synthase -
  PT259_RS00495 thiF 125855..126568 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  PT259_RS00500 thiS 126621..126815 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  PT259_RS00505 - 127252..128274 (+) 1023 WP_172458537.1 aldo/keto reductase -
  PT259_RS00510 - 128458..128949 (+) 492 WP_011742637.1 MarR family winged helix-turn-helix transcriptional regulator -
  PT259_RS00515 rcrP 129076..130827 (+) 1752 WP_011742638.1 ABC transporter ATP-binding protein Regulator
  PT259_RS00520 rcrQ 130839..132680 (+) 1842 WP_011742639.1 ABC transporter ATP-binding protein Regulator
  PT259_RS00525 - 132851..133831 (+) 981 WP_011742640.1 aldo/keto reductase -
  PT259_RS00530 - 133916..134968 (-) 1053 WP_041777206.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64488.55 Da        Isoelectric Point: 5.3058

>NTDB_id=788474 PT259_RS00515 WP_011742638.1 129076..130827(+) (rcrP) [Bifidobacterium adolescentis strain LMG 10502]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVAGGKMLLVSLGSAACAVVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAAEAVDKLTTFSDMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=788474 PT259_RS00515 WP_011742638.1 129076..130827(+) (rcrP) [Bifidobacterium adolescentis strain LMG 10502]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGCGGCCTGCGCCGTCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTTGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTATCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGAAGCCGTCGACAAGCTCACCACCTTCTCCGACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ZZJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.586

100

0.518