Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PT966_RS18345 Genome accession   NZ_CP117945
Coordinates   3684583..3685728 (+) Length   381 a.a.
NCBI ID   WP_077722992.1    Uniprot ID   -
Organism   Bacillus velezensis strain ZY1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679583..3690728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS18325 (PT966_18325) - 3680057..3680773 (-) 717 WP_003151075.1 Crp/Fnr family transcriptional regulator -
  PT966_RS18330 (PT966_18330) narK 3680871..3682061 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  PT966_RS18335 (PT966_18335) argS 3682196..3683866 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  PT966_RS18340 (PT966_18340) - 3683863..3684291 (-) 429 WP_003151069.1 DUF1934 family protein -
  PT966_RS18345 (PT966_18345) rapF 3684583..3685728 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  PT966_RS18350 (PT966_18350) - 3685712..3685831 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  PT966_RS18355 (PT966_18355) - 3686030..3686233 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  PT966_RS18360 (PT966_18360) - 3686247..3686450 (+) 204 WP_003151062.1 hypothetical protein -
  PT966_RS20155 - 3686485..3686671 (+) 187 Protein_3559 DUF4177 domain-containing protein -
  PT966_RS18365 (PT966_18365) - 3686859..3687140 (+) 282 WP_014306021.1 hypothetical protein -
  PT966_RS18370 (PT966_18370) - 3687184..3687696 (+) 513 WP_003151059.1 stage II sporulation protein M -
  PT966_RS18375 (PT966_18375) - 3688287..3688505 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  PT966_RS18380 (PT966_18380) speB 3688675..3689547 (-) 873 WP_072588367.1 agmatinase -
  PT966_RS18385 (PT966_18385) speE 3689607..3690437 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6057

>NTDB_id=788454 PT966_RS18345 WP_077722992.1 3684583..3685728(+) (rapF) [Bacillus velezensis strain ZY1]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=788454 PT966_RS18345 WP_077722992.1 3684583..3685728(+) (rapF) [Bacillus velezensis strain ZY1]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567